Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G121900.1 | Wheat | nucleus | 93.81 | 97.5 |
| TraesCS5A01G103900.2 | Wheat | nucleus | 87.63 | 96.96 |
| HORVU5Hr1G038970.16 | Barley | nucleus | 86.25 | 92.11 |
| Zm00001d027790_P001 | Maize | cytosol | 33.68 | 72.59 |
| Os12t0485400-01 | Rice | nucleus | 67.01 | 71.82 |
| Zm00001d020158_P001 | Maize | nucleus | 47.94 | 67.88 |
| TraesCS2B01G358600.1 | Wheat | nucleus | 56.01 | 66.94 |
| TraesCS4B01G116000.1 | Wheat | nucleus | 53.78 | 65.34 |
| GSMUA_Achr6P30140_001 | Banana | nucleus | 53.09 | 60.95 |
| TraesCS4B01G115800.1 | Wheat | nucleus | 43.47 | 60.82 |
| OQU93178 | Sorghum | nucleus | 58.08 | 57.88 |
| GSMUA_Achr6P31620_001 | Banana | cytosol | 50.34 | 57.12 |
| KRH50485 | Soybean | nucleus | 52.06 | 53.44 |
| Bra020954.1-P | Field mustard | nucleus | 48.28 | 53.32 |
| CDY09329 | Canola | nucleus | 48.45 | 53.11 |
| CDY26395 | Canola | nucleus | 47.94 | 53.04 |
| KRG89442 | Soybean | nucleus | 51.72 | 52.99 |
| KXG23456 | Sorghum | nucleus | 53.44 | 52.89 |
| CDX76472 | Canola | nucleus | 47.94 | 52.74 |
| AT4G19600.1 | Thale cress | nucleus | 48.8 | 52.5 |
| KRG89447 | Soybean | nucleus | 51.03 | 52.38 |
| AT1G35440.1 | Thale cress | cytosol | 21.99 | 51.82 |
| VIT_19s0027g01670.t01 | Wine grape | nucleus | 55.15 | 51.52 |
| CDX99359 | Canola | nucleus | 47.25 | 51.5 |
| VIT_00s0125g00270.t01 | Wine grape | nucleus | 51.37 | 51.02 |
| Bra021950.1-P | Field mustard | nucleus | 48.63 | 50.63 |
| Bra025087.1-P | Field mustard | nucleus | 49.31 | 50.62 |
| CDX82583 | Canola | nucleus | 48.97 | 50.26 |
| Solyc10g078180.1.1 | Tomato | nucleus | 52.92 | 49.6 |
| CDY39416 | Canola | nucleus | 49.31 | 49.57 |
| CDY65933 | Canola | nucleus | 48.28 | 49.47 |
| KRH13708 | Soybean | nucleus | 51.37 | 49.34 |
| KRH43745 | Soybean | nucleus | 51.72 | 49.26 |
| CDX71123 | Canola | nucleus | 22.34 | 49.24 |
| AT5G45190.2 | Thale cress | nucleus | 49.48 | 48.81 |
| CDX88692 | Canola | nucleus | 21.99 | 48.48 |
| Bra006723.1-P | Field mustard | nucleus | 21.82 | 48.11 |
| CDX99363 | Canola | nucleus | 31.1 | 44.91 |
| CDY24526 | Canola | cytosol, nucleus, peroxisome | 24.05 | 44.3 |
| Bra031514.1-P | Field mustard | cytosol | 23.88 | 43.99 |
| CDY54138 | Canola | cytosol | 23.88 | 43.99 |
| Bra013402.1-P | Field mustard | nucleus | 30.58 | 43.95 |
| CDX78940 | Canola | nucleus | 30.58 | 43.95 |
| AT4G19560.1 | Thale cress | nucleus | 33.33 | 42.17 |
| TraesCS3B01G227700.2 | Wheat | nucleus | 18.21 | 29.78 |
| TraesCS5B01G281600.1 | Wheat | peroxisome | 11.68 | 26.36 |
| TraesCS6B01G382700.1 | Wheat | peroxisome | 11.51 | 26.07 |
| TraesCS6B01G362300.1 | Wheat | nucleus | 15.81 | 22.44 |
| TraesCS6B01G125000.1 | Wheat | nucleus | 25.6 | 19.76 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G112100.2 | EnsemblPlantsGene:TraesCS5B01G112100 | Gene3D:1.10.472.10 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_N |
| ncoils:Coil | PANTHER:PTHR10026 | PANTHER:PTHR10026:SF103 | PFAM:PF00134 | PIRSF:PIRSF036580 | SEG:seg |
| SMART:SM00385 | SUPFAM:SSF47954 | TIGR:cd00043 | MapMan:13.1.1.1.9 | MapMan:15.3.2.1.2 | : |
Description
No Description!
Coordinates
chr5B:-:172624137..172631177
Molecular Weight (calculated)
65031.3 Da
IEP (calculated)
7.088
GRAVY (calculated)
-0.879
Length
582 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMLPSDLSH HGIVENSPYR ITKSGNKEAG KLSASWYFSR KEIEENSPSK RDGIDLKKET YLRKSYCTYL QDLGMRLKVP QVTIATSIVF CHRFYLRQSH
101: AKNDRRTIAT VCMFLAGKVE ETPRPLKDVI LVSYELIHKK DPAAGQKIKQ REVYDQQKEL ILLGERVVLA TLGFDLNVHH PYKPLVETIK KFKITHNALP
201: QVAWNFVNDG LRTSLCLQFK PHHIAAGALF LAGKFLKVKF LPDDGEKAWY QEFDVTPRQL EEVSNQMLEL YEQNRVVQSQ PTNGNEAEGS SAGVPNQRIS
301: VKAEANSEEP RVVHHPASKQ PDSNPSTSTG VPIHNGAEHS KPHKQIGSQK SLQSDNGGHE NDKTSSQSGG RVDTSTKDGL HDGTKSLSRS SRPSDKPGIP
401: TEEKPLPSHA SSSELRDGNL SNSGDPSVSS SMMDAMNKID KDKVKAALEK RRKLKGDVAR KVHVMDDDDL LERELEHGVE LAVEDEKIKQ ERNDCSMHQE
501: DHRNADGVAE NGDNNGDQNV PETAKEAEVL VDIKDEHSLT KRNDGFEHKP QHPSDAPKHS VSHHDAQLGG RHEEHKMPRP EG
101: AKNDRRTIAT VCMFLAGKVE ETPRPLKDVI LVSYELIHKK DPAAGQKIKQ REVYDQQKEL ILLGERVVLA TLGFDLNVHH PYKPLVETIK KFKITHNALP
201: QVAWNFVNDG LRTSLCLQFK PHHIAAGALF LAGKFLKVKF LPDDGEKAWY QEFDVTPRQL EEVSNQMLEL YEQNRVVQSQ PTNGNEAEGS SAGVPNQRIS
301: VKAEANSEEP RVVHHPASKQ PDSNPSTSTG VPIHNGAEHS KPHKQIGSQK SLQSDNGGHE NDKTSSQSGG RVDTSTKDGL HDGTKSLSRS SRPSDKPGIP
401: TEEKPLPSHA SSSELRDGNL SNSGDPSVSS SMMDAMNKID KDKVKAALEK RRKLKGDVAR KVHVMDDDDL LERELEHGVE LAVEDEKIKQ ERNDCSMHQE
501: DHRNADGVAE NGDNNGDQNV PETAKEAEVL VDIKDEHSLT KRNDGFEHKP QHPSDAPKHS VSHHDAQLGG RHEEHKMPRP EG
001: MAGVLAGECS YSESGVSSHS RNSHEKQEEV SRWYFGRKEI EENSPSRLDG IDLKKETYLR KSYCTFLQDL GMRLKVPQVT IATAIIFCHR FFFRQSHAKN
101: DRRTIATVCM FLAGKVEETP RPLKDVIFVS YEIINKKDPG ASQKIKQKEV YEQQKELILN GEKIVLSTLG FDLNVYHPYK PLVEAIKKFK VAQNALAQVA
201: WNFVNDGLRT SLCLQFKPHH IAAGAIFLAA KFLKVKLPSD GEKVWWQEFD VTPRQLEDVS NQMLELYEQN RVPASQGSEV ESSVGGGSAQ RPGSRNAVST
301: DEHVGSRQTS SVRSTHEQSN SDNHGGSSKG VLNQNNENGG GEAANVSVDN KEEIERETKE SSLHLESHPA HKDNVREAPH NSRPLVEGPG KDNSEREGGE
401: LQDDGAVHKS RNVDVGDALI SQSPKDLKLL RDKVKAKREK AKKLLGERTR KKDLMDEDDL IERELEDVQL AVEDEKTKER KVQSRPKAEN SDLMGTEHGE
501: ILDVKGEVKN TEEGEMVNNN VSPMMHSRKR KMGSPPEKQS EGKRRHNSEN GEESHKTSRG SSHHGDREHR RHSQENNHS
101: DRRTIATVCM FLAGKVEETP RPLKDVIFVS YEIINKKDPG ASQKIKQKEV YEQQKELILN GEKIVLSTLG FDLNVYHPYK PLVEAIKKFK VAQNALAQVA
201: WNFVNDGLRT SLCLQFKPHH IAAGAIFLAA KFLKVKLPSD GEKVWWQEFD VTPRQLEDVS NQMLELYEQN RVPASQGSEV ESSVGGGSAQ RPGSRNAVST
301: DEHVGSRQTS SVRSTHEQSN SDNHGGSSKG VLNQNNENGG GEAANVSVDN KEEIERETKE SSLHLESHPA HKDNVREAPH NSRPLVEGPG KDNSEREGGE
401: LQDDGAVHKS RNVDVGDALI SQSPKDLKLL RDKVKAKREK AKKLLGERTR KKDLMDEDDL IERELEDVQL AVEDEKTKER KVQSRPKAEN SDLMGTEHGE
501: ILDVKGEVKN TEEGEMVNNN VSPMMHSRKR KMGSPPEKQS EGKRRHNSEN GEESHKTSRG SSHHGDREHR RHSQENNHS
Arabidopsis Description
Cyclin family protein [Source:UniProtKB/TrEMBL;Acc:F4KD43]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.