Factsheet for HORVU5Hr1G038970.16

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
iPSORT:	plastid
MultiLoc:	cytosol
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G103900.2	Wheat	nucleus	89.17	92.4
TraesCS5D01G121900.1	Wheat	nucleus	93.39	90.89
TraesCS5B01G112100.2	Wheat	nucleus	92.11	86.25
Zm00001d027790_P001	Maize	cytosol	35.6	71.85
Os12t0485400-01	Rice	nucleus	68.07	68.32
Zm00001d020158_P001	Maize	nucleus	50.83	67.4
HORVU2Hr1G083340.2	Barley	nucleus	58.17	65.23
HORVU4Hr1G021250.6	Barley	nucleus	56.15	63.88
HORVU0Hr1G007890.2	Barley	cytosol, nucleus	42.02	60.1
GSMUA_Achr6P30140_001	Banana	nucleus	54.31	58.38
OQU93178	Sorghum	nucleus	60.18	56.16
GSMUA_Achr6P31620_001	Banana	cytosol	52.84	56.14
AT1G35440.1	Thale cress	cytosol	23.67	52.23
KRH50485	Soybean	nucleus	54.13	52.03
Bra020954.1-P	Field mustard	nucleus	50.09	51.8
CDY09329	Canola	nucleus	50.46	51.79
CDY26395	Canola	nucleus	49.91	51.71
CDX76472	Canola	nucleus	50.09	51.61
KRG89442	Soybean	nucleus	53.76	51.58
AT4G19600.1	Thale cress	nucleus	50.83	51.2
KXG23456	Sorghum	nucleus	55.05	51.02
KRG89447	Soybean	nucleus	53.03	50.97
VIT_00s0125g00270.t01	Wine grape	nucleus	53.76	50.0
CDX99359	Canola	nucleus	48.99	50.0
VIT_19s0027g01670.t01	Wine grape	nucleus	56.7	49.6
CDX71123	Canola	nucleus	23.85	49.24
Bra025087.1-P	Field mustard	nucleus	51.01	49.03
CDX82583	Canola	nucleus	50.83	48.85
CDX88692	Canola	nucleus	23.49	48.48
Bra021950.1-P	Field mustard	nucleus	49.72	48.48
Solyc10g078180.1.1	Tomato	nucleus	55.23	48.47
KRH13708	Soybean	nucleus	53.58	48.18
Bra006723.1-P	Field mustard	nucleus	23.3	48.11
CDY39416	Canola	nucleus	51.01	48.01
KRH43745	Soybean	nucleus	53.76	47.95
AT5G45190.2	Thale cress	nucleus	51.38	47.46
CDY65933	Canola	nucleus	49.36	47.36
CDX99363	Canola	nucleus	33.58	45.41
CDY24526	Canola	cytosol, nucleus, peroxisome	26.24	45.25
CDY54138	Canola	cytosol	26.24	45.25
HORVU4Hr1G021220.13	Barley	cytosol	36.51	45.23
Bra031514.1-P	Field mustard	cytosol	26.05	44.94
CDX78940	Canola	nucleus	33.21	44.69
Bra013402.1-P	Field mustard	nucleus	33.21	44.69
AT4G19560.1	Thale cress	nucleus	36.15	42.83
HORVU6Hr1G056640.2	Barley	plastid	5.14	32.94
HORVU3Hr1G059980.2	Barley	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	18.53	26.3
HORVU6Hr1G083890.3	Barley	plastid	13.03	23.43
HORVU6Hr1G080430.3	Barley	nucleus	17.61	21.52
HORVU6Hr1G017740.2	Barley	nucleus	23.12	13.86

Protein Annotations

EnsemblPlants:HORVU5Hr1G038970.16	EnsemblPlantsGene:HORVU5Hr1G038970	Gene3D:1.10.472.10	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_N
ncoils:Coil	PANTHER:PTHR10026	PANTHER:PTHR10026:SF103	PFAM:PF00134	SEG:seg	SMART:SM00385
SUPFAM:SSF47954	UniParc:UPI000B476826	UniProt:A0A287QWI1	MapMan:13.1.1.1.9	MapMan:15.3.2.1.2	:

Description

No Description!

Coordinates

chrchr5H:+:281344338..281350566

Molecular Weight (calculated)

60955.7 Da

IEP (calculated)

7.584

GRAVY (calculated)

-0.797

Length

545 amino acids

Sequence
(BLAST)

001: MAMLPSDSSH HRIVENSPYR ITKSGNKKAG KLSASWYFSR KEIEENSPSK RDGIDLKKET YLRKSYCTYL QDLGMRLKVP QVTIATSIVF CHRFYLRQSH
101: AKNDRRTIAT VCMFLAGKVE ETPRPLKDVI LVSYELIHKK DPAAGQKIKQ RVLEVYDRQK ELILLGERVV LATLGFDLNV HHPYKPLVET IKKFKITHNA
201: LPQVAWNFVN DGLRTSLCLQ FKPHLIAAGA LFLAGKFLKV KFLPDDGEKA WYQEFDVTPR QLEEVSNQML ELYEQNRVVQ SQPTNGSEAE GSSAGVPNQR
301: ISVKTAANSE EPPVVHHPAS KQSDSSASTP TGVPIHNGAE RSKPHKHIGS HRSLQNDNGD HENDKISSQS GGRVDTSTKD GLHDGTKSLP ISSRPSDKPG
401: TPTEEEKPLP AHASSSESRD GNLTNSGDPS VSSSMMDAMN KIDKDKVKAA LEKRRNSKGY VARKVDVMDD DDLLERELEH GVELAVEDEK IKQERDHCSV
501: HQEDHRNADD VAENGDNNGE QNVRETAKEA EVLVNIKDER SPTKK

Best Arabidopsis Sequence Match ( AT5G45190.1 )
(BLAST)

001: MAGVLAGECS YSESGVSSHS RNSHEKQEEV SRWYFGRKEI EENSPSRLDG IDLKKETYLR KSYCTFLQDL GMRLKVPQVT IATAIIFCHR FFFRQSHAKN
101: DRRTIATVCM FLAGKVEETP RPLKDVIFVS YEIINKKDPG ASQKIKQKEV YEQQKELILN GEKIVLSTLG FDLNVYHPYK PLVEAIKKFK VAQNALAQVA
201: WNFVNDGLRT SLCLQFKPHH IAAGAIFLAA KFLKVKLPSD GEKVWWQEFD VTPRQLEDVS NQMLELYEQN RVPASQGSEV ESSVGGGSAQ RPGSRNAVST
301: DEHVGSRQTS SVRSTHEQSN SDNHGGSSKG VLNQNNENGG GEAANVSVDN KEEIERETKE SSLHLESHPA HKDNVREAPH NSRPLVEGPG KDNSEREGGE
401: LQDDGAVHKS RNVDVGDALI SQSPKDLKLL RDKVKAKREK AKKLLGERTR KKDLMDEDDL IERELEDVQL AVEDEKTKER KVQSRPKAEN SDLMGTEHGE
501: ILDVKGEVKN TEEGEMVNNN VSPMMHSRKR KMGSPPEKQS EGKRRHNSEN GEESHKTSRG SSHHGDREHR RHSQENNHS

Arabidopsis Description

Cyclin family protein [Source:UniProtKB/TrEMBL;Acc:F4KD43]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.