CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39416	Canola	nucleus	95.77	93.78
CDY26395	Canola	nucleus	81.31	87.64
AT5G45190.2	Thale cress	nucleus	89.07	85.59
Zm00001d038497_P001	Maize	cytosol, extracellular, peroxisome	23.81	83.85
CDY65933	Canola	nucleus	82.72	82.57
CDX76472	Canola	nucleus	71.6	76.75
CDY09329	Canola	nucleus	71.25	76.08
CDX99359	Canola	nucleus	71.43	75.84
Zm00001d027790_P001	Maize	cytosol	32.28	67.78
EES11326	Sorghum	nucleus	50.79	58.78
Zm00001d026030_P014	Maize	nucleus	50.44	58.37
TraesCS4A01G199300.1	Wheat	nucleus	48.32	57.93
TraesCS4D01G113600.1	Wheat	nucleus	48.68	57.5
TraesCS4B01G116000.1	Wheat	nucleus	48.32	57.2
TraesCS2A01G323500.1	Wheat	nucleus	49.03	57.08
HORVU2Hr1G083340.2	Barley	nucleus	48.85	57.0
HORVU4Hr1G021250.6	Barley	nucleus	48.15	56.99
TraesCS2B01G358600.1	Wheat	nucleus	48.85	56.88
TraesCS2D01G339400.1	Wheat	nucleus	49.21	56.48
KRH50485	Soybean	nucleus	56.08	56.08
KRG89442	Soybean	nucleus	55.2	55.11
TraesCS4A01G199600.1	Wheat	nucleus	40.39	55.05
HORVU0Hr1G007890.2	Barley	cytosol, nucleus	36.86	54.86
EER88086	Sorghum	nucleus	45.86	54.62
TraesCS4B01G115800.1	Wheat	nucleus	39.86	54.33
KRG89447	Soybean	nucleus	54.32	54.32
Zm00001d020158_P001	Maize	nucleus	39.15	54.01
TraesCS4D01G113400.1	Wheat	nucleus	41.8	53.38
VIT_00s0125g00270.t01	Wine grape	nucleus	54.67	52.9
Zm00001d027376_P002	Maize	nucleus, plastid	50.97	51.79
TraesCS5A01G103900.2	Wheat	nucleus	47.44	51.14
CDX99363	Canola	nucleus	36.33	51.12
Os12t0485400-01	Rice	nucleus	48.85	51.01
HORVU5Hr1G038970.16	Barley	nucleus	48.85	50.83
GSMUA_Achr6P04070_001	Banana	nucleus	43.56	50.82
CDX78940	Canola	nucleus	35.98	50.37
CDY54138	Canola	cytosol	28.04	50.32
CDY24526	Canola	cytosol, nucleus, peroxisome	28.04	50.32
TraesCS5D01G121900.1	Wheat	nucleus	49.38	50.0
TraesCS5B01G112100.2	Wheat	nucleus	50.26	48.97
CDX71123	Canola	nucleus	22.57	48.48
CDX88692	Canola	nucleus	22.4	48.11
HORVU4Hr1G021220.13	Barley	cytosol	34.74	44.77
CDY60279	Canola	cytosol	23.81	43.13
CDY03933	Canola	cytosol	23.81	43.13
OQU93178	Sorghum	nucleus	44.27	42.98
KXG23456	Sorghum	nucleus	41.62	40.14
CDY11776	Canola	cytosol	22.57	40.0
CDX90099	Canola	nucleus	22.57	39.75
CDX86291	Canola	cytosol	11.29	25.4
CDX85352	Canola	cytosol	11.11	25.0
CDY66082	Canola	cytosol	11.11	25.0
CDY03883	Canola	nucleus	18.34	24.94
CDY51052	Canola	cytosol	10.93	24.7
CDY51595	Canola	nucleus	17.99	24.7
CDY51053	Canola	cytosol	10.93	24.51
CDY69301	Canola	cytosol	10.93	24.51
CDY05665	Canola	endoplasmic reticulum, extracellular	4.06	21.1
CDY27590	Canola	cytosol	13.58	12.38
CDX84949	Canola	cytosol	5.11	8.26

Protein Annotations

EnsemblPlants:CDX82583	EnsemblPlantsGene:GSBRNA2T00137761001	Gene3D:1.10.472.10	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_N
ncoils:Coil	PANTHER:PTHR10026	PANTHER:PTHR10026:SF103	PFAM:PF00134	PIRSF:PIRSF036580	ProteinID:CDX82583
ProteinID:CDX82583.1	SEG:seg	SMART:SM00385	SUPFAM:SSF47954	UniParc:UPI0004EE5E3C	MapMan:13.1.1.1.9
MapMan:15.3.2.1.2	:	:	:	:	:

Description

BnaC07g02830D

Coordinates

chrLK031829:-:90614..93795

Molecular Weight (calculated)

63640.2 Da

IEP (calculated)

7.472

GRAVY (calculated)

-1.001

Length

567 amino acids

Sequence
(BLAST)

001: MAGVLAGECS YSESGVSSHS RNSHEKQDEG SRWYFGRKEI EENSPSRLDG IDLKKETYLR KSYCTFLQDL GMRLKVPQVT IATAIIFCHR FFFRQSHAKN
101: DRRAIATVCM FLAGKVEETP HPLKEVIFVS YEIINKKDPG AAQKIKQKEV YEQQKEIILN GEKIVLSTLG FDFNVNHPYK PLVEAIKKFK VAQNALAQVA
201: WNFVNDGLRT SLCLQFKPHH IAAGAIFLAA KFLKVKLPSD GEKVWWQEFD VTPRQLEDVS NQMLELYEQN RVPASQGSEV ESSVAGGSAH RPGSRNGAST
301: DDHVGSRRTS VRSTHEHSNS DNHGGSSKGG LNQNNDNRGG EAANASIDDK EEIKRETKES PHHENHPAHD SRPLVEGPGK ENSERESGEL QDDGAVPKSR
401: KVETTGDAPI IQSPKDLKLL RDKVKAKREK AKKLLGERTR EKDVMDEDDL IERELEDVEL TVEDEKAKQR NVESRPKAEN SDLMGAEHGE IRDVKGAKNA
501: KEGEMVNDVS PVHSRKRKMG SSPPEKQTEG KSRHNSENGD EDHKRSRGTS HHGGREHRRH SQENNHS

Best Arabidopsis Sequence Match ( AT5G45190.1 )
(BLAST)

001: MAGVLAGECS YSESGVSSHS RNSHEKQEEV SRWYFGRKEI EENSPSRLDG IDLKKETYLR KSYCTFLQDL GMRLKVPQVT IATAIIFCHR FFFRQSHAKN
101: DRRTIATVCM FLAGKVEETP RPLKDVIFVS YEIINKKDPG ASQKIKQKEV YEQQKELILN GEKIVLSTLG FDLNVYHPYK PLVEAIKKFK VAQNALAQVA
201: WNFVNDGLRT SLCLQFKPHH IAAGAIFLAA KFLKVKLPSD GEKVWWQEFD VTPRQLEDVS NQMLELYEQN RVPASQGSEV ESSVGGGSAQ RPGSRNAVST
301: DEHVGSRQTS SVRSTHEQSN SDNHGGSSKG VLNQNNENGG GEAANVSVDN KEEIERETKE SSLHLESHPA HKDNVREAPH NSRPLVEGPG KDNSEREGGE
401: LQDDGAVHKS RNVDVGDALI SQSPKDLKLL RDKVKAKREK AKKLLGERTR KKDLMDEDDL IERELEDVQL AVEDEKTKER KVQSRPKAEN SDLMGTEHGE
501: ILDVKGEVKN TEEGEMVNNN VSPMMHSRKR KMGSPPEKQS EGKRRHNSEN GEESHKTSRG SSHHGDREHR RHSQENNHS

Arabidopsis Description

Cyclin family protein [Source:UniProtKB/TrEMBL;Acc:F4KD43]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.