CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69849
CDX96988
CDY31293
CDY33994

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27630.1	CDX69849	AT5G10270.1	12678503
AT1G27630.1	CDX96988	AT5G10270.1	12678503
AT1G27630.1	CDX69849	AT5G10270.1	20706207
AT1G27630.1	CDX96988	AT5G10270.1	20706207
AT1G27630.1	CDY31293	AT5G64960.1	12678503
AT1G27630.1	CDY33994	AT5G64960.1	12678503
AT1G27630.1	CDY31293	AT5G64960.1	20706207
AT1G27630.1	CDY33994	AT5G64960.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY03933	Canola	cytosol	97.44	97.44
Bra030056.1-P	Field mustard	cytosol	96.49	96.49
AT1G27630.1	Thale cress	cytosol	88.18	87.07
CDY11776	Canola	cytosol	88.5	86.56
CDX90099	Canola	nucleus	88.5	86.02
CDX71123	Canola	nucleus	30.67	36.36
CDX88692	Canola	nucleus	30.67	36.36
Solyc07g032480.2.1	Tomato	nucleus	43.77	33.17
PGSC0003DMT400044127	Potato	nucleus	43.77	32.31
VIT_18s0001g12980.t01	Wine grape	nucleus	45.37	32.13
CDY54138	Canola	cytosol	31.95	31.65
CDY24526	Canola	cytosol, nucleus, peroxisome	31.95	31.65
GSMUA_Achr8P18640_001	Banana	nucleus	39.94	30.19
GSMUA_Achr3P20770_001	Banana	nucleus	40.26	30.14
CDX78940	Canola	nucleus	34.82	26.91
Os02t0133000-00	Rice	extracellular	37.38	26.23
CDX99363	Canola	nucleus	33.55	26.05
CDY26395	Canola	nucleus	43.77	26.05
CDX76472	Canola	nucleus	41.85	24.76
CDY09329	Canola	nucleus	41.85	24.67
CDY65933	Canola	nucleus	43.77	24.12
CDX82583	Canola	nucleus	43.13	23.81
CDX99359	Canola	nucleus	40.26	23.6
CDY39416	Canola	nucleus	43.13	23.32
CDX86291	Canola	cytosol	17.57	21.83
CDX85352	Canola	cytosol	17.25	21.43
KXG29406	Sorghum	cytosol	37.38	21.16
Zm00001d015164_P001	Maize	cytosol	36.74	21.14
CDY66082	Canola	cytosol	16.61	20.63
CDY51052	Canola	cytosol	16.29	20.32
CDY69301	Canola	cytosol	16.29	20.16
CDY51053	Canola	cytosol	16.29	20.16
CDY05665	Canola	endoplasmic reticulum, extracellular	6.71	19.27
Os02t0438200-01	Rice	nucleus	37.38	18.57
Zm00001d017392_P009	Maize	cytosol	38.34	18.29
Zm00001d051291_P003	Maize	cytosol	38.34	17.83
CDY51595	Canola	nucleus	23.32	17.68
CDY03883	Canola	nucleus	23.32	17.51
EES07541	Sorghum	plastid	38.66	17.36
TraesCS6A01G096600.1	Wheat	nucleus	37.38	16.6
TraesCS6B01G125000.1	Wheat	nucleus	37.38	15.52
TraesCS6D01G087700.1	Wheat	nucleus	36.42	13.64
HORVU6Hr1G017740.2	Barley	nucleus	29.71	10.23
CDY27590	Canola	cytosol	19.81	9.97
CDX84949	Canola	cytosol	6.07	5.41

Protein Annotations

EnsemblPlants:CDY60279	EnsemblPlantsGene:GSBRNA2T00028413001	Gene3D:1.10.472.10	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_N
PANTHER:PTHR10026	PANTHER:PTHR10026:SF77	PFAM:PF00134	PIRSF:PIRSF028758	ProteinID:CDY60279	ProteinID:CDY60279.1
SMART:SM00385	SUPFAM:SSF47954	UniParc:UPI0004EF21BD	UniProt:A0A078J6T5	MapMan:13.1.1.1.9	:

Description

BnaA07g36600DBnaA07g36600D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J6T5]

Coordinates

chrLK033862:-:39451..42420

Molecular Weight (calculated)

36612.1 Da

IEP (calculated)

8.227

GRAVY (calculated)

-0.300

Length

313 amino acids

Sequence
(BLAST)

001: MGEEHQRKRS RQHFEAEEAR HLSLRECETS KWYFSREEIE RFSPSRKDGI DLPKESFLRS SYCSFLQRLG MQLHVSQVTI GCAMVMCHRF YMRQSHAKND
101: WQTIATASLF LACKVEDEPC QLSNVVVASY EIIFEWDPSA SIRILQTECY HEFKEIILAG ERLLLDTSAF HLLDVELPYK HLAAALNRLN AWPDLATAAW
201: NFVHDWLRTT LCLQYKPHVI ATATVHLAAT FQNAKVGSRR DWWLDFGVTT KLLKEVIQEM YMLIEVNRRR AMPPPRREVA WAVPTVIKPP VHLARGYPFH
301: SYPMQSYRQP GIW

Best Arabidopsis Sequence Match ( AT1G27630.1 )
(BLAST)

001: MGEEHPRKRS RQHFEAEARN VSLFESPQCE TSKWYFSREE IERFSPSRKD GIDLVKESFL RSSYCTFLQR LGMKLHVSQV TISCAMVMCH RFYMRQSHAK
101: NDWQTIATSS LFLACKAEDE PCQLSSVVVA SYEIIYEWDP SASIRIHQTE CYHEFKEIIL SGESLLLSTS AFHLDIELPY KPLAAALNRL NAWPDLATAA
201: WNFVHDWIRT TLCLQYKPHV IATATVHLAA TFQNAKVGSR RDWWLEFGVT TKLLKEVIQE MCTLIEVDRR RNMPPPPPPP RRELSWAIPA AVKPVHMARA
301: YPFHSYPLQS YRQAGIW

Arabidopsis Description

CYCT1-3Cyclin-T1-3 [Source:UniProtKB/Swiss-Prot;Acc:Q8LBC0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.