CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76472	Canola	nucleus	96.8	97.16
Bra020954.1-P	Field mustard	nucleus	96.23	96.96
Zm00001d038497_P001	Maize	cytosol, extracellular, peroxisome	26.37	86.96
CDX99359	Canola	nucleus	84.18	83.71
AT4G19600.1	Thale cress	nucleus	84.93	83.36
CDY26395	Canola	nucleus	73.45	74.14
CDX82583	Canola	nucleus	76.08	71.25
CDY65933	Canola	nucleus	76.08	71.13
CDY39416	Canola	nucleus	77.02	70.64
Zm00001d027790_P001	Maize	cytosol	34.09	67.04
TraesCS4A01G199300.1	Wheat	nucleus	51.22	57.51
EES11326	Sorghum	nucleus	52.73	57.14
TraesCS4D01G113600.1	Wheat	nucleus	51.41	56.88
TraesCS4B01G116000.1	Wheat	nucleus	51.22	56.78
Zm00001d026030_P014	Maize	nucleus	52.35	56.73
HORVU4Hr1G021250.6	Barley	nucleus	50.85	56.37
HORVU2Hr1G083340.2	Barley	nucleus	51.04	55.76
TraesCS2A01G323500.1	Wheat	nucleus	51.04	55.65
KRH50485	Soybean	nucleus	59.13	55.38
TraesCS2B01G358600.1	Wheat	nucleus	50.66	55.24
Zm00001d020158_P001	Maize	nucleus	42.56	54.99
TraesCS2D01G339400.1	Wheat	nucleus	51.04	54.86
HORVU0Hr1G007890.2	Barley	cytosol, nucleus	39.17	54.59
KRG89442	Soybean	nucleus	58.38	54.58
KRG89447	Soybean	nucleus	57.44	53.79
TraesCS4A01G199600.1	Wheat	nucleus	41.81	53.37
TraesCS4B01G115800.1	Wheat	nucleus	41.62	53.12
EER88086	Sorghum	nucleus	47.27	52.73
VIT_00s0125g00270.t01	Wine grape	nucleus	58.19	52.73
TraesCS4D01G113400.1	Wheat	nucleus	42.94	51.35
TraesCS5A01G103900.2	Wheat	nucleus	50.85	51.33
Os12t0485400-01	Rice	nucleus	52.35	51.2
Zm00001d027376_P002	Maize	nucleus, plastid	53.11	50.54
HORVU5Hr1G038970.16	Barley	nucleus	51.79	50.46
CDX71123	Canola	nucleus	25.05	50.38
CDX99363	Canola	nucleus	38.04	50.12
GSMUA_Achr6P04070_001	Banana	nucleus	45.76	50.0
CDX88692	Canola	nucleus	24.86	50.0
TraesCS5D01G121900.1	Wheat	nucleus	52.73	50.0
CDX78940	Canola	nucleus	37.66	49.38
CDY54138	Canola	cytosol	29.0	48.73
TraesCS5B01G112100.2	Wheat	nucleus	53.11	48.45
CDY24526	Canola	cytosol, nucleus, peroxisome	28.63	48.1
HORVU4Hr1G021220.13	Barley	cytosol	36.53	44.09
OQU93178	Sorghum	nucleus	46.14	41.95
CDY03933	Canola	cytosol	24.67	41.85
CDY60279	Canola	cytosol	24.67	41.85
KXG23456	Sorghum	nucleus	44.44	40.14
CDY11776	Canola	cytosol	23.35	38.75
CDX90099	Canola	nucleus	23.35	38.51
CDY03883	Canola	nucleus	18.83	23.98
CDX86291	Canola	cytosol	11.3	23.81
CDY51595	Canola	nucleus	18.46	23.73
CDY66082	Canola	cytosol	11.11	23.41
CDX85352	Canola	cytosol	11.11	23.41
CDY51052	Canola	cytosol	10.92	23.11
CDY51053	Canola	cytosol	10.92	22.92
CDY69301	Canola	cytosol	10.92	22.92
CDY05665	Canola	endoplasmic reticulum, extracellular	4.33	21.1
CDY27590	Canola	cytosol	14.31	12.22
CDX84949	Canola	cytosol	5.08	7.69

Protein Annotations

EnsemblPlants:CDY09329	EnsemblPlantsGene:GSBRNA2T00001657001	Gene3D:1.10.472.10	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_N
PANTHER:PTHR10026	PANTHER:PTHR10026:SF103	PFAM:PF00134	PIRSF:PIRSF036580	ProteinID:CDY09329	ProteinID:CDY09329.1
SEG:seg	SMART:SM00385	SUPFAM:SSF47954	UniParc:UPI0004EE30ED	UniProt:A0A078F8G7	MapMan:13.1.1.1.9
MapMan:15.3.2.1.2	:	:	:	:	:

Description

BnaC03g63590DBnaC03g63590D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F8G7]

Coordinates

chrLK031994:-:927144..930772

Molecular Weight (calculated)

59140.0 Da

IEP (calculated)

6.475

GRAVY (calculated)

-0.851

Length

531 amino acids

Sequence
(BLAST)

001: MAGVLGGECS YNESGVSSYS RNSNENQEEG SRWYFGRKEI EENSPSRLDG IDLKKETYLR KSYCTFLQDL GMRLKVPQIT IATSIIFCHR FFIRQSHARN
101: DRRTIATVCM FLAGKVEETP RPLKDVIVVS YEIIHKKDPA TAQKIKQKEV YEQQKELILS GEKIVLSTLG FDFNVYHPYK PLVEAIKKFK VAQNALAQVA
201: WNFVNDGLRT SLCLQFKPHH IAAGAIFLAA KFLKVKLPSD GEKVWWQEFD VTPRQLEDVS NQMLELYEQN RVPASQGSEV ESSVGGGSGH HVGSKPISAQ
301: RPSHEHSKSD SHGGSSKATE NHRNENGSGE AGSVITEHTE NQPADKSRPG VEEPAKDKTE RTGAHLPDDS AAHDKSRNVN TSDVPVSQSP KDLKLLRDKV
401: KAKLEAKKLQ GERTRKKDLI DEDDLIEREL EDVELAVDDD KDNQKKNSKT NHMGTEQGDL LDGNNLVCNA EEGEMVDDDV SLTVPSRKRK IESPCEKQLG
501: EGKRQHNDNS ENVEGQKTSG GGSSSHNGHG D

Best Arabidopsis Sequence Match ( AT4G19600.1 )
(BLAST)

001: MAGVLAGDCS FGESGVSSYS RNSNEKQDEV ARWYFGRKEI EENSPSRLDS IDLKKETYLR KSYCTFLQDL GMRLKVPQVT IATAIIFCHR FFIRQSHARN
101: DRRTIATVCM FLAGKVEETP RPLKDVIVVS YEIIHKKDPT TAQKIKQKEV YEQQKELILN GEKIVLSTLG FDFNVYHPYK PLVEAIKKFK VAQNALAQVA
201: WNFVNDGLRT SLCLQFKPHH IAAGAIFLAA KFLKVKLPSD GEKVWWQEFD VTPRQLEDVS NQMLELYEQN RVPASQVSEV ESSVGGGSAH HVGSRPSARL
301: THEHSNSDNL GGSTKATQNR SNDNGSGEAG SVITEQKGER DTETKDSMHT ESHPAHKSRS GVEAPGEDKI EKAGAHFPED DKSRIVGTAD VTVSQSPKDI
401: KMFRDKVKAK LEAKKVQGEK TRKKDLVDED DLIERELEDV ELAVEDDKDI QNKSSMGTEH GEILDGNNLV VNTEEGEMID DVSSTMPSRK RKMESPCEKQ
501: LGEGKRRHDN SENVEEGQKT NPGGSSHSYG DREPRRHSQE R

Arabidopsis Description

CYCT1-4Cyclin-T1-4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GYM6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.