CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69849
CDX96988
CDY31293
CDY33994

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27630.1	CDX69849	AT5G10270.1	12678503
AT1G27630.1	CDX96988	AT5G10270.1	12678503
AT1G27630.1	CDX69849	AT5G10270.1	20706207
AT1G27630.1	CDX96988	AT5G10270.1	20706207
AT1G27630.1	CDY31293	AT5G64960.1	12678503
AT1G27630.1	CDY33994	AT5G64960.1	12678503
AT1G27630.1	CDY31293	AT5G64960.1	20706207
AT1G27630.1	CDY33994	AT5G64960.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra010927.1-P	Field mustard	nucleus	99.07	99.69
CDY11776	Canola	cytosol	98.14	98.75
AT1G27630.1	Thale cress	cytosol	87.58	88.96
CDY60279	Canola	cytosol	86.02	88.5
CDY03933	Canola	cytosol	85.71	88.18
CDX71123	Canola	nucleus	29.5	35.98
CDX88692	Canola	nucleus	29.5	35.98
Solyc07g032480.2.1	Tomato	nucleus	41.3	32.2
VIT_18s0001g12980.t01	Wine grape	nucleus	43.48	31.67
PGSC0003DMT400044127	Potato	nucleus	40.99	31.13
GSMUA_Achr3P20770_001	Banana	nucleus	38.51	29.67
GSMUA_Achr8P18640_001	Banana	nucleus	37.89	29.47
CDY54138	Canola	cytosol	28.88	29.43
CDY24526	Canola	cytosol, nucleus, peroxisome	28.57	29.11
CDX78940	Canola	nucleus	32.92	26.17
Os02t0133000-00	Rice	extracellular	36.02	26.01
CDX99363	Canola	nucleus	31.68	25.31
CDY26395	Canola	nucleus	39.75	24.33
CDX76472	Canola	nucleus	38.51	23.44
CDY09329	Canola	nucleus	38.51	23.35
CDX99359	Canola	nucleus	37.58	22.66
CDX82583	Canola	nucleus	39.75	22.57
CDY65933	Canola	nucleus	39.75	22.54
CDX86291	Canola	cytosol	17.39	22.22
CDY39416	Canola	nucleus	39.75	22.11
CDX85352	Canola	cytosol	17.08	21.83
CDY51053	Canola	cytosol	16.77	21.34
CDY69301	Canola	cytosol	16.77	21.34
KXG29406	Sorghum	cytosol	36.65	21.34
Zm00001d015164_P001	Maize	cytosol	35.71	21.14
CDY66082	Canola	cytosol	16.15	20.63
CDY51052	Canola	cytosol	15.84	20.32
CDY05665	Canola	endoplasmic reticulum, extracellular	6.83	20.18
Os02t0438200-01	Rice	nucleus	35.71	18.25
Zm00001d017392_P009	Maize	cytosol	36.34	17.84
CDY51595	Canola	nucleus	22.36	17.43
Zm00001d051291_P003	Maize	cytosol	36.02	17.24
CDY03883	Canola	nucleus	22.05	17.03
EES07541	Sorghum	plastid	36.34	16.79
TraesCS6A01G096600.1	Wheat	nucleus	36.34	16.6
TraesCS6B01G125000.1	Wheat	nucleus	36.34	15.52
TraesCS6D01G087700.1	Wheat	nucleus	36.34	14.0
CDY27590	Canola	cytosol	19.57	10.13
HORVU6Hr1G017740.2	Barley	nucleus	27.64	9.79
CDX84949	Canola	cytosol	5.28	4.84

Protein Annotations

EnsemblPlants:CDX90099	EnsemblPlantsGene:GSBRNA2T00150615001	Gene3D:1.10.472.10	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_N
PANTHER:PTHR10026	PANTHER:PTHR10026:SF77	PFAM:PF00134	PIRSF:PIRSF028758	ProteinID:CDX90099	ProteinID:CDX90099.1
SEG:seg	SMART:SM00385	SUPFAM:SSF47954	UniParc:UPI0004EF3552	MapMan:13.1.1.1.9	:

Description

BnaA08g18850D

Coordinates

chrLK031862:+:58239..61023

Molecular Weight (calculated)

37481.1 Da

IEP (calculated)

8.705

GRAVY (calculated)

-0.378

Length

322 amino acids

Sequence
(BLAST)

001: MGEEQHPRKR SRQHFEAEET RHISLLKSPR CETAKWYFSK EEIERFSPSR KDGIDLAKES FLRSSYCTFI QRLGMKLHVS QVIIGCAMVM CHRFYMRQSH
101: AKNNWQTIAT SSLFLACKAE DEPCQLSSVV VASYEIIYEW DPSASIRIHQ TEYYHEFKEF ILAGERLLLD TSAFQLLDVE LPYKPLAAAL NRVNAWPDLA
201: TASWNFVHDW LRTTLCLQYK PHVIATATVH LASTFQNGKV GSRRDWWLDF GVTTKLLKEV IQEMCMLIEV DRRRSMPPPP PPPPRREVAW AIPAPLKPPV
301: HMSRGYPFHS YPLQSYRQPG IW

Best Arabidopsis Sequence Match ( AT1G27630.1 )
(BLAST)

001: MGEEHPRKRS RQHFEAEARN VSLFESPQCE TSKWYFSREE IERFSPSRKD GIDLVKESFL RSSYCTFLQR LGMKLHVSQV TISCAMVMCH RFYMRQSHAK
101: NDWQTIATSS LFLACKAEDE PCQLSSVVVA SYEIIYEWDP SASIRIHQTE CYHEFKEIIL SGESLLLSTS AFHLDIELPY KPLAAALNRL NAWPDLATAA
201: WNFVHDWIRT TLCLQYKPHV IATATVHLAA TFQNAKVGSR RDWWLEFGVT TKLLKEVIQE MCTLIEVDRR RNMPPPPPPP RRELSWAIPA AVKPVHMARA
301: YPFHSYPLQS YRQAGIW

Arabidopsis Description

CYCT1-3Cyclin-T1-3 [Source:UniProtKB/Swiss-Prot;Acc:Q8LBC0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.