Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G096600.1 | Wheat | nucleus | 89.66 | 95.89 |
| TraesCS6D01G087700.1 | Wheat | nucleus | 93.5 | 84.33 |
| HORVU6Hr1G017740.2 | Barley | nucleus | 79.97 | 66.34 |
| Os02t0133000-00 | Rice | extracellular | 32.76 | 55.38 |
| KXG29406 | Sorghum | cytosol | 34.88 | 47.56 |
| Zm00001d015164_P001 | Maize | cytosol | 33.02 | 45.77 |
| GSMUA_Achr3P20770_001 | Banana | nucleus | 22.68 | 40.91 |
| GSMUA_Achr8P18640_001 | Banana | nucleus | 21.88 | 39.86 |
| Bra030056.1-P | Field mustard | cytosol | 15.65 | 37.7 |
| CDY03933 | Canola | cytosol | 15.52 | 37.38 |
| CDY60279 | Canola | cytosol | 15.52 | 37.38 |
| AT1G27630.1 | Thale cress | cytosol | 15.38 | 36.59 |
| Bra010927.1-P | Field mustard | nucleus | 15.52 | 36.56 |
| CDX90099 | Canola | nucleus | 15.52 | 36.34 |
| CDY11776 | Canola | cytosol | 15.38 | 36.25 |
| VIT_18s0001g12980.t01 | Wine grape | nucleus | 20.82 | 35.52 |
| TraesCS4B01G115800.1 | Wheat | nucleus | 18.04 | 32.69 |
| Solyc07g032480.2.1 | Tomato | nucleus | 17.9 | 32.69 |
| PGSC0003DMT400044127 | Potato | nucleus | 18.04 | 32.08 |
| TraesCS4B01G116000.1 | Wheat | nucleus | 19.89 | 31.32 |
| TraesCS2B01G358600.1 | Wheat | nucleus | 19.76 | 30.6 |
| TraesCS3B01G227700.2 | Wheat | nucleus | 12.47 | 26.4 |
| TraesCS5B01G112100.2 | Wheat | nucleus | 19.76 | 25.6 |
| TraesCS6B01G362300.1 | Wheat | nucleus | 13.13 | 24.15 |
| TraesCS6B01G382700.1 | Wheat | peroxisome | 7.43 | 21.79 |
| TraesCS5B01G281600.1 | Wheat | peroxisome | 7.43 | 21.71 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G125000.1 | EnsemblPlantsGene:TraesCS6B01G125000 | Gene3D:1.10.472.10 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_N |
| PANTHER:PTHR10026 | PANTHER:PTHR10026:SF76 | PFAM:PF00134 | SEG:seg | SMART:SM00385 | SUPFAM:SSF47954 |
| TIGR:cd00043 | MapMan:13.1.1.1.9 | : | : | : | : |
Description
No Description!
Coordinates
chr6B:-:120008494..120013259
Molecular Weight (calculated)
82414.3 Da
IEP (calculated)
11.028
GRAVY (calculated)
-0.607
Length
754 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEGGERGRS WYLSKEEIEQ GSPSRKDGMP AAREAHLRSI YSSYIRDVGR RLGVPDITIA TGIVLCHRFY LHQSLLKNEW QTVATACIFL ASKIEDTPCQ
101: LGRVVTVAHE TMYKRKPDAA RRIKQKEVLE KRKDLILMGE ALLLSTIRFD FNIQHPYEPL NLALKNLGIS QKEVKQAAIN LINDTLRTTL VVQFKPHYIA
201: AGALHIAAKF HDVTLPSEQG KVWWHQFDVA PKQLQAAIQQ MKQVFNERNQ RPAGPAIGPI QAPAPAPVEK QQAVRFPKPA LVAKQQTLSL PKPAPVAKQQ
301: TLSLLKPAPV EEQQAVSFLK PAPLAKQQIV SSQKPAPVEE HQTVRSPKPA PLEEQQTVSS LKPALVEERQ TPAPAEKQQT ASSPKPALAE KQQTASSPKP
401: APAEKQQTAS SPKPALAEKQ QTASSLKPAP AEKQQTVNSP KPAPVEKQQI ISFPMPVLKY TYSRRGLRNT TAPTVTPTPT LVKKQQKIST PDGPVSHAFS
501: PRGVLNGPTS APTITPNPMK KQQALSTLDS VQRQAHPSVG GVKRTRSPAQ DRTLVKKQKI ISAPNSVVRH ARPSVVVVRP TGSPARARTP VKKSQIISAQ
601: DSVPRHTRPS VGGERRPSTA PAPTPASALA RKHPTISTPD SVLRHTDPSR NEDSKPLRMH VDHSLSRTAK DGRLEKPSFQ AALNANHGHH VGSGPKDVNM
701: TRVPNLVGQK RRIQEAAGQP PAPADRCAGD ASRRPQLPSL IVAPPSWKKQ KIDV
101: LGRVVTVAHE TMYKRKPDAA RRIKQKEVLE KRKDLILMGE ALLLSTIRFD FNIQHPYEPL NLALKNLGIS QKEVKQAAIN LINDTLRTTL VVQFKPHYIA
201: AGALHIAAKF HDVTLPSEQG KVWWHQFDVA PKQLQAAIQQ MKQVFNERNQ RPAGPAIGPI QAPAPAPVEK QQAVRFPKPA LVAKQQTLSL PKPAPVAKQQ
301: TLSLLKPAPV EEQQAVSFLK PAPLAKQQIV SSQKPAPVEE HQTVRSPKPA PLEEQQTVSS LKPALVEERQ TPAPAEKQQT ASSPKPALAE KQQTASSPKP
401: APAEKQQTAS SPKPALAEKQ QTASSLKPAP AEKQQTVNSP KPAPVEKQQI ISFPMPVLKY TYSRRGLRNT TAPTVTPTPT LVKKQQKIST PDGPVSHAFS
501: PRGVLNGPTS APTITPNPMK KQQALSTLDS VQRQAHPSVG GVKRTRSPAQ DRTLVKKQKI ISAPNSVVRH ARPSVVVVRP TGSPARARTP VKKSQIISAQ
601: DSVPRHTRPS VGGERRPSTA PAPTPASALA RKHPTISTPD SVLRHTDPSR NEDSKPLRMH VDHSLSRTAK DGRLEKPSFQ AALNANHGHH VGSGPKDVNM
701: TRVPNLVGQK RRIQEAAGQP PAPADRCAGD ASRRPQLPSL IVAPPSWKKQ KIDV
001: MGEEHPRKRS RQHFEAEARN VSLFESPQCE TSKWYFSREE IERFSPSRKD GIDLVKESFL RSSYCTFLQR LGMKLHVSQV TISCAMVMCH RFYMRQSHAK
101: NDWQTIATSS LFLACKAEDE PCQLSSVVVA SYEIIYEWDP SASIRIHQTE CYHEFKEIIL SGESLLLSTS AFHLDIELPY KPLAAALNRL NAWPDLATAA
201: WNFVHDWIRT TLCLQYKPHV IATATVHLAA TFQNAKVGSR RDWWLEFGVT TKLLKEVIQE MCTLIEVDRR RNMPPPPPPP RRELSWAIPA AVKPVHMARA
301: YPFHSYPLQS YRQAGIW
101: NDWQTIATSS LFLACKAEDE PCQLSSVVVA SYEIIYEWDP SASIRIHQTE CYHEFKEIIL SGESLLLSTS AFHLDIELPY KPLAAALNRL NAWPDLATAA
201: WNFVHDWIRT TLCLQYKPHV IATATVHLAA TFQNAKVGSR RDWWLEFGVT TKLLKEVIQE MCTLIEVDRR RNMPPPPPPP RRELSWAIPA AVKPVHMARA
301: YPFHSYPLQS YRQAGIW
Arabidopsis Description
CYCT1-3Cyclin-T1-3 [Source:UniProtKB/Swiss-Prot;Acc:Q8LBC0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.