Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d012392_P001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG29406 | Sorghum | cytosol | 72.24 | 71.07 |
| Os02t0133000-00 | Rice | extracellular | 46.14 | 56.28 |
| Zm00001d038497_P001 | Maize | cytosol, extracellular, peroxisome | 13.05 | 44.1 |
| Zm00001d027790_P001 | Maize | cytosol | 21.51 | 43.33 |
| GSMUA_Achr3P20770_001 | Banana | nucleus | 29.6 | 38.52 |
| AT1G27630.1 | Thale cress | cytosol | 21.88 | 37.54 |
| CDY03933 | Canola | cytosol | 21.32 | 37.06 |
| Bra030056.1-P | Field mustard | cytosol | 21.14 | 36.74 |
| CDY60279 | Canola | cytosol | 21.14 | 36.74 |
| GSMUA_Achr8P18640_001 | Banana | nucleus | 27.94 | 36.72 |
| Bra010927.1-P | Field mustard | nucleus | 21.14 | 35.94 |
| CDX90099 | Canola | nucleus | 21.14 | 35.71 |
| CDY11776 | Canola | cytosol | 20.96 | 35.62 |
| TraesCS6A01G096600.1 | Wheat | nucleus | 44.49 | 34.33 |
| TraesCS6B01G125000.1 | Wheat | nucleus | 45.77 | 33.02 |
| VIT_18s0001g12980.t01 | Wine grape | nucleus | 26.65 | 32.81 |
| Zm00001d033021_P001 | Maize | cytosol | 10.85 | 32.24 |
| Solyc07g032480.2.1 | Tomato | nucleus | 23.16 | 30.51 |
| PGSC0003DMT400044127 | Potato | nucleus | 23.16 | 29.72 |
| Zm00001d020158_P001 | Maize | nucleus | 22.43 | 29.68 |
| Zm00001d026030_P014 | Maize | nucleus | 26.65 | 29.59 |
| TraesCS6D01G087700.1 | Wheat | nucleus | 44.85 | 29.19 |
| Zm00001d019681_P002 | Maize | nucleus | 10.48 | 26.76 |
| Zm00001d027376_P002 | Maize | nucleus, plastid | 26.47 | 25.81 |
| Zm00001d017392_P009 | Maize | cytosol | 30.7 | 25.46 |
| Zm00001d051291_P003 | Maize | cytosol | 30.88 | 24.96 |
| HORVU6Hr1G017740.2 | Barley | nucleus | 40.99 | 24.53 |
| Zm00001d040936_P002 | Maize | plastid | 13.05 | 21.65 |
| Zm00001d021031_P002 | Maize | endoplasmic reticulum, vacuole | 9.74 | 16.83 |
| Zm00001d019684_P002 | Maize | mitochondrion | 7.17 | 13.98 |
| Zm00001d033023_P001 | Maize | cytosol | 4.23 | 9.35 |
Protein Annotations
| EnsemblPlants:Zm00001d015164_P001 | EnsemblPlants:Zm00001d015164_T001 | EnsemblPlantsGene:Zm00001d015164 | EntrezGene:103626584 | Gene3D:1.10.472.10 | InterPro:Cyclin-like |
| InterPro:Cyclin-like_sf | InterPro:Cyclin_N | PANTHER:PTHR10026 | PANTHER:PTHR10026:SF76 | PFAM:PF00134 | PIRSF:PIRSF036580 |
| ProteinID:AQK68202.1 | SEG:seg | SMART:SM00385 | SUPFAM:SSF47954 | UniParc:UPI0002207453 | UniProt:A0A1D6GZP5 |
| MapMan:13.1.1.1.9 | : | : | : | : | : |
Description
Cyclin-T1-3
Coordinates
chr5:-:78146032..78151108
Molecular Weight (calculated)
61114.2 Da
IEP (calculated)
10.278
GRAVY (calculated)
-0.730
Length
544 amino acids
Sequence
(BLAST)
(BLAST)
001: MGAARGEEDG EGRCGERCPS WYVSREEIES GSPSRRDGVS AAKEAELRAT YCSFIRDVCI RLRLPQITMA TAIMLCHRFY LRQSHAKNEW QTIATVCIFL
101: GSKIEDTPCQ LKHVVIVSYE TMYHKNPDAA KRIHQEHEVL AKQKALILVG ETLLLSTIRF DFNIHHPYEP LKLALKKLGI AETELRQSAM SLINDTLPST
201: LVIQFKPQYI AAASLWFAAK FHNVNLSQNG TIWWHVFDVA PDPLRVVVQQ MSELFEKRAP CSVGPVTKPV PASSATDKHQ IKPAPTHTPM DKHQIKQVPA
301: PMNRHQIKPV PTPTPMDKHH IKQIPAPAPT CRHHIKPVPT PIPTPMDKQQ NKLAPTPMDK QQNKLAPTPM DKQQNKPAAA PAPTDRCQRV STPVPAPRDT
401: QSSRRSFSSS SNTEAPRRVP AGRSSNEKPR DRSPRHEGHW CRGKDGENQH CQKHRDHNSE QRPEERSNQR ALKSGLAYLV RSGGPKDTGA ATEIRNLTRR
501: KRRIQEVGGL PTPVYTSDTD AWRQVSAVVL FGTKGQKRPR GDEP
101: GSKIEDTPCQ LKHVVIVSYE TMYHKNPDAA KRIHQEHEVL AKQKALILVG ETLLLSTIRF DFNIHHPYEP LKLALKKLGI AETELRQSAM SLINDTLPST
201: LVIQFKPQYI AAASLWFAAK FHNVNLSQNG TIWWHVFDVA PDPLRVVVQQ MSELFEKRAP CSVGPVTKPV PASSATDKHQ IKPAPTHTPM DKHQIKQVPA
301: PMNRHQIKPV PTPTPMDKHH IKQIPAPAPT CRHHIKPVPT PIPTPMDKQQ NKLAPTPMDK QQNKLAPTPM DKQQNKPAAA PAPTDRCQRV STPVPAPRDT
401: QSSRRSFSSS SNTEAPRRVP AGRSSNEKPR DRSPRHEGHW CRGKDGENQH CQKHRDHNSE QRPEERSNQR ALKSGLAYLV RSGGPKDTGA ATEIRNLTRR
501: KRRIQEVGGL PTPVYTSDTD AWRQVSAVVL FGTKGQKRPR GDEP
001: MGEEHPRKRS RQHFEAEARN VSLFESPQCE TSKWYFSREE IERFSPSRKD GIDLVKESFL RSSYCTFLQR LGMKLHVSQV TISCAMVMCH RFYMRQSHAK
101: NDWQTIATSS LFLACKAEDE PCQLSSVVVA SYEIIYEWDP SASIRIHQTE CYHEFKEIIL SGESLLLSTS AFHLDIELPY KPLAAALNRL NAWPDLATAA
201: WNFVHDWIRT TLCLQYKPHV IATATVHLAA TFQNAKVGSR RDWWLEFGVT TKLLKEVIQE MCTLIEVDRR RNMPPPPPPP RRELSWAIPA AVKPVHMARA
301: YPFHSYPLQS YRQAGIW
101: NDWQTIATSS LFLACKAEDE PCQLSSVVVA SYEIIYEWDP SASIRIHQTE CYHEFKEIIL SGESLLLSTS AFHLDIELPY KPLAAALNRL NAWPDLATAA
201: WNFVHDWIRT TLCLQYKPHV IATATVHLAA TFQNAKVGSR RDWWLEFGVT TKLLKEVIQE MCTLIEVDRR RNMPPPPPPP RRELSWAIPA AVKPVHMARA
301: YPFHSYPLQS YRQAGIW
Arabidopsis Description
CYCT1-3Cyclin-T1-3 [Source:UniProtKB/Swiss-Prot;Acc:Q8LBC0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.