Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d038497_P001 | Maize | cytosol, extracellular, peroxisome | 44.81 | 75.16 |
| Zm00001d020158_P001 | Maize | nucleus | 81.85 | 53.77 |
| AT1G35440.1 | Thale cress | cytosol | 42.96 | 46.96 |
| CDX71123 | Canola | nucleus | 42.59 | 43.56 |
| CDX88692 | Canola | nucleus | 42.22 | 43.18 |
| Bra006723.1-P | Field mustard | nucleus | 41.85 | 42.8 |
| Zm00001d026030_P014 | Maize | nucleus | 74.81 | 41.22 |
| OQU93178 | Sorghum | nucleus | 84.44 | 39.04 |
| Os12t0485400-01 | Rice | nucleus | 77.41 | 38.49 |
| GSMUA_Achr6P30140_001 | Banana | nucleus | 71.48 | 38.07 |
| CDY24526 | Canola | cytosol, nucleus, peroxisome | 44.44 | 37.97 |
| Bra031514.1-P | Field mustard | cytosol | 44.44 | 37.97 |
| CDY54138 | Canola | cytosol | 44.07 | 37.66 |
| TraesCS5A01G103900.2 | Wheat | nucleus | 72.22 | 37.07 |
| GSMUA_Achr6P31620_001 | Banana | cytosol | 69.63 | 36.65 |
| Zm00001d027376_P002 | Maize | nucleus, plastid | 73.7 | 35.66 |
| HORVU5Hr1G038970.16 | Barley | nucleus | 71.85 | 35.6 |
| TraesCS5D01G121900.1 | Wheat | nucleus | 72.96 | 35.18 |
| CDY26395 | Canola | nucleus | 67.78 | 34.79 |
| KRH50485 | Soybean | nucleus | 72.22 | 34.39 |
| Bra020954.1-P | Field mustard | nucleus | 67.04 | 34.35 |
| CDX76472 | Canola | nucleus | 67.04 | 34.22 |
| KRG89442 | Soybean | nucleus | 71.85 | 34.15 |
| CDY09329 | Canola | nucleus | 67.04 | 34.09 |
| CDX99363 | Canola | nucleus | 50.74 | 33.99 |
| Bra013402.1-P | Field mustard | nucleus | 50.74 | 33.83 |
| CDX78940 | Canola | nucleus | 50.74 | 33.83 |
| TraesCS5B01G112100.2 | Wheat | nucleus | 72.59 | 33.68 |
| AT4G19600.1 | Thale cress | nucleus | 67.41 | 33.64 |
| CDX99359 | Canola | nucleus | 66.3 | 33.52 |
| KRG89447 | Soybean | nucleus | 70.37 | 33.51 |
| Bra021950.1-P | Field mustard | nucleus | 67.78 | 32.74 |
| Bra025087.1-P | Field mustard | nucleus | 68.15 | 32.45 |
| CDX82583 | Canola | nucleus | 67.78 | 32.28 |
| CDY65933 | Canola | nucleus | 67.78 | 32.22 |
| AT4G19560.1 | Thale cress | nucleus | 54.81 | 32.17 |
| CDY39416 | Canola | nucleus | 68.15 | 31.78 |
| VIT_00s0125g00270.t01 | Wine grape | nucleus | 68.89 | 31.74 |
| VIT_19s0027g01670.t01 | Wine grape | nucleus | 72.59 | 31.46 |
| AT5G45190.2 | Thale cress | nucleus | 68.52 | 31.36 |
| Zm00001d033021_P001 | Maize | cytosol | 21.11 | 31.15 |
| KRH13708 | Soybean | nucleus | 68.89 | 30.69 |
| KRH43745 | Soybean | nucleus | 68.89 | 30.44 |
| Solyc10g078180.1.1 | Tomato | nucleus | 68.89 | 29.95 |
| Zm00001d019681_P002 | Maize | nucleus | 20.0 | 25.35 |
| Zm00001d040936_P002 | Maize | plastid | 27.78 | 22.87 |
| Zm00001d015164_P001 | Maize | cytosol | 43.33 | 21.51 |
| Zm00001d021031_P002 | Maize | endoplasmic reticulum, vacuole | 22.96 | 19.68 |
| Zm00001d017392_P009 | Maize | cytosol | 47.41 | 19.51 |
| Zm00001d051291_P003 | Maize | cytosol | 47.41 | 19.02 |
| Zm00001d033023_P001 | Maize | cytosol | 9.26 | 10.16 |
| Zm00001d019684_P002 | Maize | mitochondrion | 9.63 | 9.32 |
Protein Annotations
| EnsemblPlants:Zm00001d027790_P001 | EnsemblPlants:Zm00001d027790_T001 | EnsemblPlantsGene:Zm00001d027790 | Gene3D:1.10.472.10 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf |
| InterPro:Cyclin_N | PANTHER:PTHR10026 | PANTHER:PTHR10026:SF103 | PFAM:PF00134 | PIRSF:PIRSF036580 | ProteinID:ONL93960.1 |
| SMART:SM00385 | SUPFAM:SSF47954 | UniParc:UPI0008450A01 | UniProt:A0A1D6JPN3 | MapMan:13.1.1.1.9 | MapMan:15.3.2.1.2 |
Description
Cyclin-T1-5
Coordinates
chr1:+:13576388..13580832
Molecular Weight (calculated)
30873.4 Da
IEP (calculated)
9.891
GRAVY (calculated)
-0.357
Length
270 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKPSDSSHH GVVDNSSNGS QARREEAGKL GPSWYFSRRE IEENSPSRRD GIDLKKESSI RKLYCKFLQE LGMALKMPQV TIATAMVFCH RFYLRQSLAK
101: NDRRIIATVC IFLAGKVEET PKPLKDVIVV SYGIINKNDP KASQRIKQQK EIYDKQKELI LLGERVVLVT LGFDLNINHA YKPLVEAIRR FNIDKRSPLP
201: QVAWNFVNDG LRTSLCLQFE PHHIAAGAIY LAAKFLKVNL PSDGDKIWWQ DFDVTPRQLE DCSSKFLRLI
101: NDRRIIATVC IFLAGKVEET PKPLKDVIVV SYGIINKNDP KASQRIKQQK EIYDKQKELI LLGERVVLVT LGFDLNINHA YKPLVEAIRR FNIDKRSPLP
201: QVAWNFVNDG LRTSLCLQFE PHHIAAGAIY LAAKFLKVNL PSDGDKIWWQ DFDVTPRQLE DCSSKFLRLI
001: MDEALNENAS GSESDASSVA SNLHDDEIIP WFFSREEIER NSPSRRDGID LKTETRLRDS YCTFLEILGE RLKVPQVTIA TAIFFCHRFF LRQSHAKNDR
101: QTIATVCMLL AGKVEETPVT LEDVIIASYE RIHKKDLAGA QRKEVYDQQK ELVLIGEELV LSTLNFDLCI SHPYKPLVEA IKKYMVEDAK TQLAQFAWNF
201: VNDCLRTTLC LQYQPHHIAA GAILLAAELP TVDLQSYREV LCQEFDITPC QLEDIRGQIL ELYERIPTSQ ESKVESSGGV AVVHQPISRD MASTEKCPSS
301: DIEGGSSQVN LSQSDDHSVH DGSRSEGIGE VNSESEAQKN LQDHSVGNIM VEKSDDVGVV QLKKDLQLHQ EEVESKQEKD KKSFEKDITK IDLMDEKDLT
401: ESEVEDEINK TMQTGRQIFM KVEDPDDNMT VEHSEIRNAN NSGVDDELVA DTCLINDSDL
101: QTIATVCMLL AGKVEETPVT LEDVIIASYE RIHKKDLAGA QRKEVYDQQK ELVLIGEELV LSTLNFDLCI SHPYKPLVEA IKKYMVEDAK TQLAQFAWNF
201: VNDCLRTTLC LQYQPHHIAA GAILLAAELP TVDLQSYREV LCQEFDITPC QLEDIRGQIL ELYERIPTSQ ESKVESSGGV AVVHQPISRD MASTEKCPSS
301: DIEGGSSQVN LSQSDDHSVH DGSRSEGIGE VNSESEAQKN LQDHSVGNIM VEKSDDVGVV QLKKDLQLHQ EEVESKQEKD KKSFEKDITK IDLMDEKDLT
401: ESEVEDEINK TMQTGRQIFM KVEDPDDNMT VEHSEIRNAN NSGVDDELVA DTCLINDSDL
Arabidopsis Description
CYCT1-2Cyclin-T1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q56YF8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.