CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH43745	Soybean	nucleus	95.05	94.27
Zm00001d038497_P001	Maize	cytosol, extracellular, peroxisome	24.42	91.93
Zm00001d027790_P001	Maize	cytosol	30.69	68.89
VIT_19s0027g01670.t01	Wine grape	nucleus	68.15	66.29
TraesCS4A01G199300.1	Wheat	nucleus	50.99	65.33
EES11326	Sorghum	nucleus	52.31	64.69
HORVU2Hr1G083340.2	Barley	nucleus	51.82	64.61
TraesCS4D01G113600.1	Wheat	nucleus	51.16	64.58
TraesCS2B01G358600.1	Wheat	nucleus	51.82	64.48
TraesCS2A01G323500.1	Wheat	nucleus	51.82	64.48
TraesCS4B01G116000.1	Wheat	nucleus	50.66	64.09
TraesCS2D01G339400.1	Wheat	nucleus	51.98	63.77
HORVU4Hr1G021250.6	Barley	nucleus	50.33	63.67
Zm00001d026030_P014	Maize	nucleus	51.49	63.67
HORVU0Hr1G007890.2	Barley	cytosol, nucleus	39.77	63.25
KRH50485	Soybean	nucleus	56.77	60.67
Solyc10g078180.1.1	Tomato	nucleus	61.88	60.39
EER88086	Sorghum	nucleus	47.19	60.08
KRG89442	Soybean	nucleus	55.94	59.68
Zm00001d020158_P001	Maize	nucleus	40.43	59.61
KRG89447	Soybean	nucleus	54.79	58.55
TraesCS4A01G199600.1	Wheat	nucleus	39.93	58.17
TraesCS4B01G115800.1	Wheat	nucleus	39.93	58.17
Zm00001d027376_P002	Maize	nucleus, plastid	52.31	56.81
TraesCS4D01G113400.1	Wheat	nucleus	41.58	56.76
Os12t0485400-01	Rice	nucleus	49.01	54.7
TraesCS5A01G103900.2	Wheat	nucleus	46.86	53.99
HORVU5Hr1G038970.16	Barley	nucleus	48.18	53.58
TraesCS5D01G121900.1	Wheat	nucleus	48.84	52.86
GSMUA_Achr6P04070_001	Banana	nucleus	41.75	52.06
TraesCS5B01G112100.2	Wheat	nucleus	49.34	51.37
HORVU4Hr1G021220.13	Barley	cytosol	33.5	46.14
OQU93178	Sorghum	nucleus	43.56	45.21
KXG23456	Sorghum	nucleus	41.25	42.52
KRG91263	Soybean	nucleus	20.13	32.53
KRH35545	Soybean	nucleus	19.8	32.26
KRH27619	Soybean	cytosol	18.81	30.65
KRG99632	Soybean	cytosol	11.06	26.48
KRH46635	Soybean	cytosol	11.06	26.48
KRH33999	Soybean	nucleus	18.32	24.78
KRG92800	Soybean	nucleus	17.82	24.38

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:100791516	MapMan:13.1.1.1.9	MapMan:15.3.2.1.2	EMBL:ACUP02009774	InterPro:Cyclin-like
InterPro:Cyclin-like_sf	InterPro:Cyclin_N	EnsemblPlantsGene:GLYMA_15G258300	GO:GO:0000307	GO:GO:0003674	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006464	GO:GO:0007049
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016538	GO:GO:0019538
GO:GO:0030234	GO:GO:0045737	GO:GO:0045944	GO:GO:1901409	UniProt:I1MJ97	EnsemblPlants:KRH13708
ProteinID:KRH13708	ProteinID:KRH13708.1	PFAM:PF00134	PIRSF:PIRSF036580	PANTHER:PTHR10026	PANTHER:PTHR10026:SF103
SMART:SM00385	SUPFAM:SSF47954	UniParc:UPI000233BCFC	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr15:-:48899412..48908116

Molecular Weight (calculated)

68642.5 Da

IEP (calculated)

7.497

GRAVY (calculated)

-0.885

Length

606 amino acids

Sequence
(BLAST)

001: MAGLLLGDAS HHGTSQVVSQ PEDGSRWYFY RKEIEEYSPS KHDGIDLKKE TYLRKSYCTF LQDLGMRLKV PQVTIATAII FCHRFFLRQS HAKNDRRTIA
101: TVCMFLAGKV EETPRPLKDV ILISYEIIHK KDPAAIMRIK QKEVYEQHKE LILLGERVVL ATLGFDLNVH HPYKPLVEAI KKFKVAQNAL AQVAWNFVND
201: GLRTSLCLQF KPHHIAAGAI FLAAKFLKVK LPSDGEKVWW QEFDVTPRQL EEVSNQMLEL YEQNRMPPSN DVEGGGTSNR TTAKALATND ENAAAKSNSQ
301: AGATRLETSK TASSMAIFDS PVPNHVGRPI SNHGRSGDYG STEMKHRVEG DAKGNQYPER ESIPFKENSH EAQDVVKFRF DNGEKEHESN AGGTETKELT
401: ELKDRHNSRN PDHREDAFSR PPQEAIKKID TDKVKAALEK RRKAAGHITK KTDVMDDDDL IERELEDGIE LAPQSEKNKD KRQSWSKPSD RSDYDNMRGR
501: HLDHEDEQYH GVKGLASYEP DLSAVEEGEV SALDDIGVGL PSPKSSNRKR KAGSSPERGM EGKQRHNYGL GPNHNNRFDY VEDRNKVSRL GHTERDSKRH
601: VQENHV

Best Arabidopsis Sequence Match ( AT4G19560.1 )
(BLAST)

001: MDEALNENAS GSESDASSVA SNLHDDEIIP WFFSREEIER NSPSRRDGID LKTETRLRDS YCTFLEILGE RLKVPQVTIA TAIFFCHRFF LRQSHAKNDR
101: QTIATVCMLL AGKVEETPVT LEDVIIASYE RIHKKDLAGA QRKEVYDQQK ELVLIGEELV LSTLNFDLCI SHPYKPLVEA IKKYMVEDAK TQLAQFAWNF
201: VNDCLRTTLC LQYQPHHIAA GAILLAAELP TVDLQSYREV LCQEFDITPC QLEDIRGQIL ELYERIPTSQ ESKVESSGGV AVVHQPISRD MASTEKCPSS
301: DIEGGSSQVN LSQSDDHSVH DGSRSEGIGE VNSESEAQKN LQDHSVGNIM VEKSDDVGVV QLKKDLQLHQ EEVESKQEKD KKSFEKDITK IDLMDEKDLT
401: ESEVEDEINK TMQTGRQIFM KVEDPDDNMT VEHSEIRNAN NSGVDDELVA DTCLINDSDL

Arabidopsis Description

CYCT1-2Cyclin-T1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q56YF8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.