Factsheet for VIT_19s0027g01670.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038497_P001	Maize	cytosol, extracellular, peroxisome	23.92	92.55
Zm00001d027790_P001	Maize	cytosol	31.46	72.59
Solyc10g078180.1.1	Tomato	nucleus	70.95	71.18
EES11326	Sorghum	nucleus	54.25	68.98
KRH43745	Soybean	nucleus	67.58	68.9
TraesCS4A01G199300.1	Wheat	nucleus	52.01	68.5
HORVU2Hr1G083340.2	Barley	nucleus	53.29	68.31
KRH13708	Soybean	nucleus	66.29	68.15
HORVU4Hr1G021250.6	Barley	nucleus	52.33	68.06
TraesCS2A01G323500.1	Wheat	nucleus	52.97	67.76
TraesCS2B01G358600.1	Wheat	nucleus	52.97	67.76
Zm00001d026030_P014	Maize	nucleus	53.29	67.76
TraesCS4D01G113600.1	Wheat	nucleus	52.01	67.5
TraesCS4B01G116000.1	Wheat	nucleus	51.85	67.43
HORVU0Hr1G007890.2	Barley	cytosol, nucleus	41.09	67.19
TraesCS2D01G339400.1	Wheat	nucleus	53.13	67.0
VIT_00s0125g00270.t01	Wine grape	nucleus	60.83	64.68
EER88086	Sorghum	nucleus	48.48	63.45
TraesCS4D01G113400.1	Wheat	nucleus	44.14	61.94
TraesCS4B01G115800.1	Wheat	nucleus	41.25	61.78
Zm00001d020158_P001	Maize	nucleus	40.61	61.56
TraesCS4A01G199600.1	Wheat	nucleus	41.09	61.54
Os12t0485400-01	Rice	nucleus	52.49	60.22
Zm00001d027376_P002	Maize	nucleus, plastid	53.93	60.22
TraesCS5A01G103900.2	Wheat	nucleus	48.15	57.03
HORVU5Hr1G038970.16	Barley	nucleus	49.6	56.7
TraesCS5D01G121900.1	Wheat	nucleus	50.4	56.07
TraesCS5B01G112100.2	Wheat	nucleus	51.52	55.15
GSMUA_Achr6P04070_001	Banana	nucleus	43.02	55.14
OQU93178	Sorghum	nucleus	45.43	48.46
HORVU4Hr1G021220.13	Barley	cytosol	34.19	48.41
KXG23456	Sorghum	nucleus	42.7	45.24
VIT_05s0020g03070.t01	Wine grape	endoplasmic reticulum, extracellular	5.78	40.91
VIT_18s0001g12980.t01	Wine grape	nucleus	28.57	40.27
VIT_05s0020g03060.t01	Wine grape	nucleus	14.77	29.21
VIT_00s0360g00050.t01	Wine grape	cytosol	10.27	25.5
VIT_17s0053g01060.t01	Wine grape	cytosol	3.69	21.9
VIT_12s0028g00110.t01	Wine grape	nucleus	18.3	20.92

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:100265067	wikigene:100265067	MapMan:13.1.1.1.9	MapMan:15.3.2.1.2	EMBL:AM454958
ProteinID:CAN74426	ProteinID:CAN74426.1	ProteinID:CCB47198	ProteinID:CCB47198.1	InterPro:Cyclin-like	InterPro:Cyclin-like_sf
InterPro:Cyclin_N	UniProt:F6H4Q9	EMBL:FN595234	GO:GO:0000307	GO:GO:0003674	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006464	GO:GO:0007049
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016538	GO:GO:0019538
GO:GO:0030234	GO:GO:0045737	GO:GO:0045944	GO:GO:1901409	EntrezGene:LOC100265067	wikigene:LOC100265067
PFAM:PF00134	PIRSF:PIRSF036580	PANTHER:PTHR10026	PANTHER:PTHR10026:SF103	SMART:SM00385	SUPFAM:SSF47954
UniParc:UPI000210A372	ArrayExpress:VIT_19s0027g01670	EnsemblPlantsGene:VIT_19s0027g01670	EnsemblPlants:VIT_19s0027g01670.t01	RefSeq:XP_002268838	RefSeq:XP_002268838.2
RefSeq:XP_010644871.1	RefSeq:XP_010644872.1	RefSeq:XP_010644873.1	RefSeq:XP_010644874.1	RefSeq:XP_010644875.1	RefSeq:XP_010644876.1
RefSeq:XP_010644877.1	RefSeq:XP_010644878.1	RefSeq:XP_010644879.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr19:-:21934456..21949835

Molecular Weight (calculated)

70298.0 Da

IEP (calculated)

7.180

GRAVY (calculated)

-1.035

Length

623 amino acids

Sequence
(BLAST)

001: MAGLLPGDPS HHGMYEGGSY KFPQDKPEEG GRWYLSRKEI EENSPSKRDG IDLKKETYLR KSYCTFLQDL GMRLKVPQVT IATAIIFCHR FFLRQSHAKN
101: DRRTIATVCM FLAGKVEETP RPLKDVILVS YEIINKKDPA AVQRIKQKEV YEQQKELILL GERVVLATLG FDLNVHHPYK PLVEAIKKFK VAQNALAQVA
201: WNFVNDGLRT SLCLQFKPHH IAAGAIFLAA KFLKVKLPSD GEKVWWQEFD VTPRQLEEVS NQMLELYEQN RVPPSQGSEV EGSVGGGAAH RATSKAPAAN
301: EEYVMSNAHG GGTPLKPATS KPVASKPASD QPYVDNISGP SRTSQNRSND YGSTEMRSAS DHKADGESSD YHEHEPSLYQ ENLGEGQNAS RHGSEGPGED
401: DQERTGGRSE AREAGELKDK YHGRNLEYRD GLLGQSPQEA IKKIDKDKVK AALEKRRKTR GDMTRKTDLM DEDDLIEREL EDGIELAVET EKTKRERRQS
501: WPKPSNRPEH ESSHHGKHQD DEDGHHQGLK PLSSRGSDLE NVEEGEVSAF DDADRAFRSP KSSSRKRKPG SSPEKLSDGK QRHDYMPGSH HHNHHDFPED
601: RNRLGRLGYS ERDHKRHAQE NHV

Best Arabidopsis Sequence Match ( AT5G45190.1 )
(BLAST)

001: MAGVLAGECS YSESGVSSHS RNSHEKQEEV SRWYFGRKEI EENSPSRLDG IDLKKETYLR KSYCTFLQDL GMRLKVPQVT IATAIIFCHR FFFRQSHAKN
101: DRRTIATVCM FLAGKVEETP RPLKDVIFVS YEIINKKDPG ASQKIKQKEV YEQQKELILN GEKIVLSTLG FDLNVYHPYK PLVEAIKKFK VAQNALAQVA
201: WNFVNDGLRT SLCLQFKPHH IAAGAIFLAA KFLKVKLPSD GEKVWWQEFD VTPRQLEDVS NQMLELYEQN RVPASQGSEV ESSVGGGSAQ RPGSRNAVST
301: DEHVGSRQTS SVRSTHEQSN SDNHGGSSKG VLNQNNENGG GEAANVSVDN KEEIERETKE SSLHLESHPA HKDNVREAPH NSRPLVEGPG KDNSEREGGE
401: LQDDGAVHKS RNVDVGDALI SQSPKDLKLL RDKVKAKREK AKKLLGERTR KKDLMDEDDL IERELEDVQL AVEDEKTKER KVQSRPKAEN SDLMGTEHGE
501: ILDVKGEVKN TEEGEMVNNN VSPMMHSRKR KMGSPPEKQS EGKRRHNSEN GEESHKTSRG SSHHGDREHR RHSQENNHS

Arabidopsis Description

Cyclin family protein [Source:UniProtKB/TrEMBL;Acc:F4KD43]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.