Factsheet for HORVU4Hr1G021250.6

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU0Hr1G007890.2	Barley	cytosol, nucleus	78.5	98.69
TraesCS4A01G199300.1	Wheat	nucleus	94.57	95.77
TraesCS4B01G116000.1	Wheat	nucleus	94.57	94.57
TraesCS4D01G113600.1	Wheat	nucleus	94.57	94.38
Zm00001d038497_P001	Maize	cytosol, extracellular, peroxisome	30.48	90.68
HORVU2Hr1G083340.2	Barley	nucleus	85.18	83.95
EES11326	Sorghum	nucleus	83.3	81.43
Zm00001d026030_P014	Maize	nucleus	82.05	80.2
EER88086	Sorghum	nucleus	72.86	73.32
Zm00001d027376_P002	Maize	nucleus, plastid	80.79	69.35
GSMUA_Achr6P30140_001	Banana	nucleus	69.31	65.48
GSMUA_Achr6P31620_001	Banana	cytosol	62.21	58.09
HORVU5Hr1G038970.16	Barley	nucleus	63.88	56.15
KRH50485	Soybean	nucleus	62.63	52.91
KRG89442	Soybean	nucleus	62.42	52.64
VIT_19s0027g01670.t01	Wine grape	nucleus	68.06	52.33
VIT_00s0125g00270.t01	Wine grape	nucleus	63.88	52.22
CDY26395	Canola	nucleus	57.2	52.09
HORVU4Hr1G021220.13	Barley	cytosol	47.81	52.05
KRG89447	Soybean	nucleus	61.17	51.68
Bra020954.1-P	Field mustard	nucleus	56.58	51.42
CDX76472	Canola	nucleus	56.58	51.23
CDY09329	Canola	nucleus	56.37	50.85
AT4G19600.1	Thale cress	nucleus	57.41	50.83
AT1G35440.1	Thale cress	cytosol	26.1	50.61
KRH13708	Soybean	nucleus	63.67	50.33
CDX71123	Canola	nucleus	27.56	50.0
CDX99359	Canola	nucleus	55.74	50.0
KRH43745	Soybean	nucleus	63.47	49.75
Bra021950.1-P	Field mustard	nucleus	57.41	49.2
Solyc10g078180.1.1	Tomato	nucleus	63.67	49.11
Bra025087.1-P	Field mustard	nucleus	58.04	49.03
CDY65933	Canola	nucleus	57.2	48.24
CDX82583	Canola	nucleus	56.99	48.15
Bra006723.1-P	Field mustard	nucleus	26.51	48.11
CDX88692	Canola	nucleus	26.51	48.11
CDY39416	Canola	nucleus	58.04	48.01
AT5G45190.2	Thale cress	nucleus	58.25	47.29
CDX99363	Canola	nucleus	38.2	45.41
CDY24526	Canola	cytosol, nucleus, peroxisome	29.85	45.25
Bra013402.1-P	Field mustard	nucleus	38.0	44.94
CDX78940	Canola	nucleus	38.0	44.94
Bra031514.1-P	Field mustard	cytosol	29.23	44.3
CDY54138	Canola	cytosol	29.23	44.3
AT4G19560.1	Thale cress	nucleus	41.96	43.7
HORVU6Hr1G056640.2	Barley	plastid	5.64	31.76
HORVU3Hr1G059980.2	Barley	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	21.5	26.82
HORVU6Hr1G080430.3	Barley	nucleus	20.46	21.97
HORVU6Hr1G083890.3	Barley	plastid	13.78	21.78
HORVU6Hr1G017740.2	Barley	nucleus	26.93	14.19

Protein Annotations

EnsemblPlants:HORVU4Hr1G021250.6	EnsemblPlantsGene:HORVU4Hr1G021250	Gene3D:1.10.472.10	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_N
PANTHER:PTHR10026	PANTHER:PTHR10026:SF103	PFAM:PF00134	PIRSF:PIRSF036580	SMART:SM00385	SUPFAM:SSF47954
UniParc:UPI000B4759C4	UniProt:A0A287NI07	MapMan:13.1.1.1.9	MapMan:15.3.2.1.2	:	:

Description

No Description!

Coordinates

chrchr4H:-:107692691..107698005

Molecular Weight (calculated)

54357.3 Da

IEP (calculated)

8.328

GRAVY (calculated)

-0.772

Length

479 amino acids

Sequence
(BLAST)

001: MDTMQTSDSS HHGIVENSPY RTPYGRHVES GNLGGSWYFS RKEIEENSLS RKDGIDLKES YLRKSYCTFL QDFGMRLKVP QVTIATAIVF CHRFFLRQSH
101: ARNDRLTIAT VCMFLAGKVE ETPRPLKDVI LISYEIIHKK DTAAVARIKQ KEVYEQQKEL ILIGERAVLI TLGFDLNVHH PYKPLVEAIK KFKVAQNALA
201: QVAWNFVNDG LRTSLCLQFK PNHITAGAIF LAAKFLKVKL PSDGEKVWWQ EFDVTPRQLE EVSNQMLELY EQNRVVPPPS QGNDTEGSSA SVVNPRALGK
301: APGAAEERHG HENHQAPRQS SMAGPPEKKN SNQRIPKVEA KDGIASSNEG PNMSSSMDAM KKIDKDKVKA ALEKRRKSKG DAGRKVDIMD DDDLIERELE
401: HGVEMAAKDE KKHDRRQSWP QPLHQSAGRT AENAEEGELS MDSQEYLSSV TELDDRKRKD AYDHRSHDHV ERDHKRVRS

Best Arabidopsis Sequence Match ( AT4G19560.1 )
(BLAST)

001: MDEALNENAS GSESDASSVA SNLHDDEIIP WFFSREEIER NSPSRRDGID LKTETRLRDS YCTFLEILGE RLKVPQVTIA TAIFFCHRFF LRQSHAKNDR
101: QTIATVCMLL AGKVEETPVT LEDVIIASYE RIHKKDLAGA QRKEVYDQQK ELVLIGEELV LSTLNFDLCI SHPYKPLVEA IKKYMVEDAK TQLAQFAWNF
201: VNDCLRTTLC LQYQPHHIAA GAILLAAELP TVDLQSYREV LCQEFDITPC QLEDIRGQIL ELYERIPTSQ ESKVESSGGV AVVHQPISRD MASTEKCPSS
301: DIEGGSSQVN LSQSDDHSVH DGSRSEGIGE VNSESEAQKN LQDHSVGNIM VEKSDDVGVV QLKKDLQLHQ EEVESKQEKD KKSFEKDITK IDLMDEKDLT
401: ESEVEDEINK TMQTGRQIFM KVEDPDDNMT VEHSEIRNAN NSGVDDELVA DTCLINDSDL

Arabidopsis Description

CYCT1-2Cyclin-T1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q56YF8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.