Factsheet for Zm00001d027376_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 4
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038497_P001	Maize	cytosol, extracellular, peroxisome	27.42	95.03
EES11326	Sorghum	nucleus	82.08	93.47
Zm00001d026030_P014	Maize	nucleus	79.21	90.2
TraesCS2A01G323500.1	Wheat	nucleus	73.12	83.78
TraesCS2B01G358600.1	Wheat	nucleus	72.94	83.57
HORVU2Hr1G083340.2	Barley	nucleus	72.58	83.33
TraesCS2D01G339400.1	Wheat	nucleus	73.12	82.59
TraesCS4A01G199300.1	Wheat	nucleus	69.35	81.82
TraesCS4D01G113600.1	Wheat	nucleus	69.53	80.83
TraesCS4B01G116000.1	Wheat	nucleus	69.35	80.79
HORVU4Hr1G021250.6	Barley	nucleus	69.35	80.79
HORVU0Hr1G007890.2	Barley	cytosol, nucleus	53.58	78.48
Zm00001d027790_P001	Maize	cytosol	35.66	73.7
TraesCS4A01G199600.1	Wheat	nucleus	52.87	70.91
TraesCS4B01G115800.1	Wheat	nucleus	52.69	70.67
TraesCS4D01G113400.1	Wheat	nucleus	56.09	70.5
GSMUA_Achr6P30140_001	Banana	nucleus	60.75	66.86
Zm00001d020158_P001	Maize	nucleus	47.31	64.23
GSMUA_Achr6P31620_001	Banana	cytosol	55.38	60.23
KRH50485	Soybean	nucleus	55.02	54.14
VIT_19s0027g01670.t01	Wine grape	nucleus	60.22	53.93
CDY26395	Canola	nucleus	50.72	53.8
KRG89442	Soybean	nucleus	54.66	53.7
Bra020954.1-P	Field mustard	nucleus	50.18	53.13
CDY09329	Canola	nucleus	50.54	53.11
AT4G19600.1	Thale cress	nucleus	51.43	53.05
CDX76472	Canola	nucleus	50.18	52.93
KRG89447	Soybean	nucleus	53.76	52.91
CDX99359	Canola	nucleus	50.54	52.81
VIT_00s0125g00270.t01	Wine grape	nucleus	55.2	52.56
Bra025087.1-P	Field mustard	nucleus	53.23	52.38
KRH13708	Soybean	nucleus	56.81	52.31
HORVU4Hr1G021220.13	Barley	cytosol	41.22	52.27
KRH43745	Soybean	nucleus	57.17	52.21
AT1G35440.1	Thale cress	cytosol	22.76	51.42
CDY39416	Canola	nucleus	53.05	51.12
CDX82583	Canola	nucleus	51.79	50.97
CDX71123	Canola	nucleus	24.01	50.76
Bra021950.1-P	Field mustard	nucleus	50.72	50.63
Solyc10g078180.1.1	Tomato	nucleus	56.09	50.4
AT5G45190.2	Thale cress	nucleus	52.51	49.66
CDY65933	Canola	nucleus	50.54	49.65
CDX88692	Canola	nucleus	23.48	49.62
Bra006723.1-P	Field mustard	nucleus	23.3	49.24
CDX99363	Canola	nucleus	33.87	46.9
CDY24526	Canola	cytosol, nucleus, peroxisome	26.52	46.84
CDY54138	Canola	cytosol	26.52	46.84
Bra031514.1-P	Field mustard	cytosol	26.16	46.2
CDX78940	Canola	nucleus	33.51	46.17
Bra013402.1-P	Field mustard	nucleus	33.51	46.17
AT4G19560.1	Thale cress	nucleus	37.99	46.09
Zm00001d033021_P001	Maize	cytosol	10.57	32.24
Zm00001d015164_P001	Maize	cytosol	25.81	26.47
Zm00001d019681_P002	Maize	nucleus	10.04	26.29
Zm00001d040936_P002	Maize	plastid	15.05	25.61
Zm00001d017392_P009	Maize	cytosol	28.32	24.09
Zm00001d051291_P003	Maize	cytosol	28.67	23.77
Zm00001d021031_P002	Maize	endoplasmic reticulum, vacuole	12.01	21.27
Zm00001d033023_P001	Maize	cytosol	8.24	18.7
Zm00001d019684_P002	Maize	mitochondrion	8.6	17.2

Protein Annotations

EnsemblPlants:Zm00001d027376_P002	EnsemblPlants:Zm00001d027376_T002	EnsemblPlantsGene:Zm00001d027376	EntrezGene:103630860	Gene3D:1.10.472.10	InterPro:Cyclin-like
InterPro:Cyclin-like_sf	InterPro:Cyclin_N	PANTHER:PTHR10026	PANTHER:PTHR10026:SF103	PFAM:PF00134	PIRSF:PIRSF036580
ProteinID:ONL92961.1	SEG:seg	SMART:SM00385	SUPFAM:SSF47954	UniParc:UPI0008453238	UniProt:A0A1D6JLD0
MapMan:13.1.1.1.9	MapMan:15.3.2.1.2	:	:	:	:

Description

Cyclin-T1-5

Coordinates

chr1:-:3974143..3984200

Molecular Weight (calculated)

63602.0 Da

IEP (calculated)

7.208

GRAVY (calculated)

-0.758

Length

558 amino acids

Sequence
(BLAST)

001: MVPVSDTALL TTSTPLPTPS PGPPPARAPQ SLAPYAVIYL AIDFATSNTV CHTSLLQVFE KRNIIMVIMQ SSDSSHNGSH NGIVENSPYR IPYDRHAEGD
101: QLGASWYFSR KEIEENSVSR RDGIDLKKES YLRKSYCTFL QDLGMRLKVP QVTIATAIVF CHRFFLRQSH AKNDRRTIAT VCMFLAGKVE ETPRPLKDVI
201: LLSYEIIHKK DPAAVQRIKH KEVYEQQKEL ILLGERVVLV TLGFDFNVNH PYKPLVEAIK KFEVAQNALA QVAWNFVNDG LRTSLCLQFK PHHIAAGAIF
301: LAAKFLKVKL PSDGEKVWWQ EFDVTPRQLE EVSNQMLELY EQNRVQPPPS QGNDTEGSSV TAVNQRALGK VPGVVDEPPA HEHNQATRQS SQQNMSGHHG
401: YDHPHPEKRN YRVPPNEARD DSANSSEGPN VSASMMDAMK KINKDKVKAA LEKRRSKGDL SRKVDVMDDD DLIERELEHG VELAVEDEKV KQERRQSWPH
501: PSHRVDHRST DRENTEEGEL SMDSQEHHSP EHDNRKRKDA HEHRNYDRDE RDLKRLRS

Best Arabidopsis Sequence Match ( AT4G19600.1 )
(BLAST)

001: MAGVLAGDCS FGESGVSSYS RNSNEKQDEV ARWYFGRKEI EENSPSRLDS IDLKKETYLR KSYCTFLQDL GMRLKVPQVT IATAIIFCHR FFIRQSHARN
101: DRRTIATVCM FLAGKVEETP RPLKDVIVVS YEIIHKKDPT TAQKIKQKEV YEQQKELILN GEKIVLSTLG FDFNVYHPYK PLVEAIKKFK VAQNALAQVA
201: WNFVNDGLRT SLCLQFKPHH IAAGAIFLAA KFLKVKLPSD GEKVWWQEFD VTPRQLEDVS NQMLELYEQN RVPASQVSEV ESSVGGGSAH HVGSRPSARL
301: THEHSNSDNL GGSTKATQNR SNDNGSGEAG SVITEQKGER DTETKDSMHT ESHPAHKSRS GVEAPGEDKI EKAGAHFPED DKSRIVGTAD VTVSQSPKDI
401: KMFRDKVKAK LEAKKVQGEK TRKKDLVDED DLIERELEDV ELAVEDDKDI QNKSSMGTEH GEILDGNNLV VNTEEGEMID DVSSTMPSRK RKMESPCEKQ
501: LGEGKRRHDN SENVEEGQKT NPGGSSHSYG DREPRRHSQE R

Arabidopsis Description

CYCT1-4Cyclin-T1-4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GYM6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.