CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra013402.1-P	Field mustard	nucleus	99.51	99.51
CDX99363	Canola	nucleus	90.37	90.82
Zm00001d038497_P001	Maize	cytosol, extracellular, peroxisome	23.21	58.39
CDY54138	Canola	cytosol	43.95	56.33
CDY24526	Canola	cytosol, nucleus, peroxisome	42.47	54.43
AT4G19560.1	Thale cress	nucleus	60.74	53.48
Zm00001d027790_P001	Maize	cytosol	33.83	50.74
CDX71123	Canola	nucleus	26.91	41.29
TraesCS4A01G199600.1	Wheat	nucleus	41.73	40.62
CDX88692	Canola	nucleus	26.42	40.53
TraesCS4B01G115800.1	Wheat	nucleus	41.48	40.38
TraesCS4A01G199300.1	Wheat	nucleus	45.68	39.11
CDY26395	Canola	nucleus	50.62	38.97
TraesCS4D01G113400.1	Wheat	nucleus	42.72	38.96
TraesCS4D01G113600.1	Wheat	nucleus	46.17	38.96
Zm00001d026030_P014	Maize	nucleus	46.67	38.57
TraesCS4B01G116000.1	Wheat	nucleus	45.43	38.41
TraesCS2A01G323500.1	Wheat	nucleus	46.17	38.4
EES11326	Sorghum	nucleus	46.42	38.37
HORVU2Hr1G083340.2	Barley	nucleus	45.93	38.27
TraesCS2B01G358600.1	Wheat	nucleus	45.93	38.19
CDX76472	Canola	nucleus	49.88	38.19
HORVU4Hr1G021250.6	Barley	nucleus	44.94	38.0
TraesCS2D01G339400.1	Wheat	nucleus	46.17	37.85
Zm00001d020158_P001	Maize	nucleus	38.27	37.71
CDY09329	Canola	nucleus	49.38	37.66
EER88086	Sorghum	nucleus	43.7	37.18
CDX99359	Canola	nucleus	48.15	36.52
CDX82583	Canola	nucleus	50.37	35.98
CDY65933	Canola	nucleus	50.12	35.74
HORVU4Hr1G021220.13	Barley	cytosol	38.77	35.68
CDY03933	Canola	cytosol	27.41	35.46
KRH50485	Soybean	nucleus	49.63	35.45
CDY39416	Canola	nucleus	50.62	35.41
KRG89442	Soybean	nucleus	49.63	35.39
KRG89447	Soybean	nucleus	49.38	35.27
CDY60279	Canola	cytosol	26.91	34.82
GSMUA_Achr6P04070_001	Banana	nucleus	40.74	33.95
Os12t0485400-01	Rice	nucleus	45.43	33.89
Zm00001d027376_P002	Maize	nucleus, plastid	46.17	33.51
TraesCS5A01G103900.2	Wheat	nucleus	43.21	33.27
HORVU5Hr1G038970.16	Barley	nucleus	44.69	33.21
CDY11776	Canola	cytosol	26.17	33.12
HORVU0Hr1G007890.2	Barley	cytosol, nucleus	31.11	33.07
CDX90099	Canola	nucleus	26.17	32.92
VIT_00s0125g00270.t01	Wine grape	nucleus	47.16	32.59
TraesCS5D01G121900.1	Wheat	nucleus	43.7	31.61
TraesCS5B01G112100.2	Wheat	nucleus	43.95	30.58
KXG23456	Sorghum	nucleus	39.75	27.38
OQU93178	Sorghum	nucleus	38.77	26.88
CDX85352	Canola	cytosol	14.81	23.81
CDX86291	Canola	cytosol	14.57	23.41
CDY51052	Canola	cytosol	14.32	23.11
CDY66082	Canola	cytosol	14.07	22.62
CDY51053	Canola	cytosol	13.83	22.13
CDY69301	Canola	cytosol	13.83	22.13
CDY03883	Canola	nucleus	19.51	18.94
CDY51595	Canola	nucleus	19.26	18.89
CDY05665	Canola	endoplasmic reticulum, extracellular	4.44	16.51
CDY27590	Canola	cytosol	16.05	10.45
CDX84949	Canola	cytosol	4.69	5.41

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.9	GO:A0A078CPZ7	EnsemblPlants:CDX78940	ProteinID:CDX78940	ProteinID:CDX78940.1
InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	EnsemblPlantsGene:GSBRNA2T00131438001	PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF036580
PANTHER:PTHR10026	PANTHER:PTHR10026:SF103	SMART:SM00385	SUPFAM:SSF47954	UniParc:UPI0004EF06ED	SEG:seg

Description

BnaA01g10070D

Coordinates

chrLK031816:+:975169..977316

Molecular Weight (calculated)

45198.1 Da

IEP (calculated)

4.706

GRAVY (calculated)

-0.570

Length

405 amino acids

Sequence
(BLAST)

001: MDGTLPVKVP GNQGDDATSV SWYLSRQEIE KNSPSRRDGI GLKKEIRLRK SYCTFLKNLG VRLKVPQITI ATAIVFCHRF FLRQSHAKND RWTIATACMF
101: LAGKAEETPR VLQDVAIVSY EIIHKKDVPA AQRKEVCEQQ KKSVLSAEEL LLSTLNFDLC VGHPYEPLID AIKKYKVEEV KAQFPQVAWS FVNDCYGTTL
201: CLQYKPRQIA AGAFFLAAEH LTVDLQSYGE GLLQEFDISP GQLEDIRGQM LELYEKKHVS TTQGSVVERS NGGDIVHQTV SKEVDSADKC PSSDTGGDPS
301: KANLSQSNDQ IVHDDVSRPE GIEKDNSKIE AGENQDGHSI DEDSQLRAEE VEGEGDKDKK SSEEEGIKQD LSEREVEDVE LRDEDDKTVE MGSQCSLIAT
401: PVRLF

Best Arabidopsis Sequence Match ( AT4G19560.1 )
(BLAST)

001: MDEALNENAS GSESDASSVA SNLHDDEIIP WFFSREEIER NSPSRRDGID LKTETRLRDS YCTFLEILGE RLKVPQVTIA TAIFFCHRFF LRQSHAKNDR
101: QTIATVCMLL AGKVEETPVT LEDVIIASYE RIHKKDLAGA QRKEVYDQQK ELVLIGEELV LSTLNFDLCI SHPYKPLVEA IKKYMVEDAK TQLAQFAWNF
201: VNDCLRTTLC LQYQPHHIAA GAILLAAELP TVDLQSYREV LCQEFDITPC QLEDIRGQIL ELYERIPTSQ ESKVESSGGV AVVHQPISRD MASTEKCPSS
301: DIEGGSSQVN LSQSDDHSVH DGSRSEGIGE VNSESEAQKN LQDHSVGNIM VEKSDDVGVV QLKKDLQLHQ EEVESKQEKD KKSFEKDITK IDLMDEKDLT
401: ESEVEDEINK TMQTGRQIFM KVEDPDDNMT VEHSEIRNAN NSGVDDELVA DTCLINDSDL

Arabidopsis Description

CYCT1-2Cyclin-T1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q56YF8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.