Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- nucleus 1
- endoplasmic reticulum 4
- extracellular 4
- vacuole 3
- plasma membrane 3
- golgi 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY51053 | Canola | cytosol | 63.3 | 27.27 |
| CDY69301 | Canola | cytosol | 62.39 | 26.88 |
| TraesCS5A01G057600.1 | Wheat | mitochondrion | 48.62 | 26.37 |
| PGSC0003DMT400051796 | Potato | cytosol | 54.13 | 23.6 |
| Solyc06g083260.2.1 | Tomato | cytosol, nucleus | 54.13 | 23.6 |
| KRH46635 | Soybean | cytosol | 54.13 | 23.32 |
| KRG99632 | Soybean | cytosol | 54.13 | 23.32 |
| VIT_00s0360g00050.t01 | Wine grape | cytosol | 53.21 | 23.11 |
| CDY66082 | Canola | cytosol | 52.29 | 22.62 |
| CDY51052 | Canola | cytosol | 51.38 | 22.31 |
| Os09t0504400-01 | Rice | nucleus | 52.29 | 22.18 |
| EER97007 | Sorghum | nucleus | 51.38 | 21.79 |
| GSMUA_Achr7P02730_001 | Banana | cytosol | 52.29 | 21.67 |
| CDX86291 | Canola | cytosol | 49.54 | 21.43 |
| TraesCS6A01G349600.1 | Wheat | peroxisome | 50.46 | 21.4 |
| TraesCS6B01G382700.1 | Wheat | peroxisome | 50.46 | 21.4 |
| TraesCS6D01G332100.1 | Wheat | peroxisome | 50.46 | 21.4 |
| TraesCS5A01G282200.1 | Wheat | peroxisome | 49.54 | 20.93 |
| TraesCS5B01G281600.1 | Wheat | peroxisome | 49.54 | 20.93 |
| TraesCS5D01G289300.2 | Wheat | peroxisome | 49.54 | 20.93 |
| CDX85352 | Canola | cytosol | 47.71 | 20.63 |
| HORVU6Hr1G083890.3 | Barley | plastid | 50.46 | 18.15 |
| Zm00001d021031_P002 | Maize | endoplasmic reticulum, vacuole | 51.38 | 17.78 |
| CDX71123 | Canola | nucleus | 22.94 | 9.47 |
| CDX88692 | Canola | nucleus | 19.27 | 7.95 |
| CDY03933 | Canola | cytosol | 20.18 | 7.03 |
| CDY11776 | Canola | cytosol | 20.18 | 6.88 |
| CDX90099 | Canola | nucleus | 20.18 | 6.83 |
| CDY60279 | Canola | cytosol | 19.27 | 6.71 |
| CDY54138 | Canola | cytosol | 16.51 | 5.7 |
| CDY24526 | Canola | cytosol, nucleus, peroxisome | 16.51 | 5.7 |
| CDX99363 | Canola | nucleus | 17.43 | 4.71 |
| CDY26395 | Canola | nucleus | 22.02 | 4.56 |
| CDX99359 | Canola | nucleus | 22.02 | 4.49 |
| CDX78940 | Canola | nucleus | 16.51 | 4.44 |
| CDX76472 | Canola | nucleus | 21.1 | 4.35 |
| CDY09329 | Canola | nucleus | 21.1 | 4.33 |
| CDY65933 | Canola | nucleus | 22.02 | 4.23 |
| CDX82583 | Canola | nucleus | 21.1 | 4.06 |
| CDY39416 | Canola | nucleus | 21.1 | 3.97 |
| CDY51595 | Canola | nucleus | 14.68 | 3.87 |
| CDY03883 | Canola | nucleus | 14.68 | 3.84 |
| CDX84949 | Canola | cytosol | 9.17 | 2.85 |
| CDY27590 | Canola | cytosol | 14.68 | 2.57 |
Protein Annotations
| EnsemblPlants:CDY05665 | EnsemblPlantsGene:GSBRNA2T00120660001 | Gene3D:1.10.472.10 | GO:A0A078EUD3 | GO:GO:0003674 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0016538 | GO:GO:0016592 |
| GO:GO:0030234 | InterPro:Cyclin-like_sf | InterPro:CyclinC/Ssn8 | PANTHER:PTHR10026 | PANTHER:PTHR10026:SF7 | ProteinID:CDY05665 |
| ProteinID:CDY05665.1 | SUPFAM:SSF47954 | TMHMM:TMhelix | UniParc:UPI0004EC9EB8 | MapMan:35.1 | : |
Description
BnaC02g38720D
Coordinates
chrLK031963:+:744613..745116
Molecular Weight (calculated)
12879.6 Da
IEP (calculated)
5.513
GRAVY (calculated)
0.192
Length
109 amino acids
Sequence
(BLAST)
(BLAST)
001: MEMKILEALN FYLVVFHPYR SLPEFLQDSG LNDTSIYDLF NLGSCQRHLQ GWTSSFILIH PLYLITLACI YIASVYKEKD IRTWFEELSV DMNIVSFQNC
101: TFDHKVLFK
101: TFDHKVLFK
001: MASNFWTSTH YKELKDPEEV NVVHPLDAQR GISVEDFRLI KLHMSNYISK LAQHIKIRQR VVATAVTYMR RVYTRKSLTE YEPRLVAPTC LYLACKAEES
101: VVHAKLLVFY MKKLYADEKF RYEIKDILEM EMKVLEALNF YLVVFHPYRS LPEFLQDSGI NDTSMTHLTW GLVNDTYRMD LILIHPPFLI TLACIYIASV
201: HKEKDIKTWF EELSVDMNIV KNIAMEILDF YENHRLFTEE RVHAAFNKLA TNP
101: VVHAKLLVFY MKKLYADEKF RYEIKDILEM EMKVLEALNF YLVVFHPYRS LPEFLQDSGI NDTSMTHLTW GLVNDTYRMD LILIHPPFLI TLACIYIASV
201: HKEKDIKTWF EELSVDMNIV KNIAMEILDF YENHRLFTEE RVHAAFNKLA TNP
Arabidopsis Description
Cyclin family protein [Source:UniProtKB/TrEMBL;Acc:F4K359]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.