Factsheet for Os09t0504400-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	peroxisome
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G332100.1	Wheat	peroxisome	92.22	92.22
TraesCS6A01G349600.1	Wheat	peroxisome	92.22	92.22
EER97007	Sorghum	nucleus	91.83	91.83
TraesCS6B01G382700.1	Wheat	peroxisome	91.44	91.44
TraesCS5D01G289300.2	Wheat	peroxisome	88.33	87.98
TraesCS5B01G281600.1	Wheat	peroxisome	88.33	87.98
TraesCS5A01G282200.1	Wheat	peroxisome	87.94	87.6
GSMUA_Achr7P02730_001	Banana	cytosol	80.93	79.09
HORVU6Hr1G083890.3	Barley	plastid	92.22	78.22
KRH46635	Soybean	cytosol	73.15	74.31
Zm00001d021031_P002	Maize	endoplasmic reticulum, vacuole	91.05	74.29
VIT_00s0360g00050.t01	Wine grape	cytosol	72.37	74.1
KRG99632	Soybean	cytosol	72.76	73.91
Solyc06g083260.2.1	Tomato	cytosol, nucleus	70.82	72.8
PGSC0003DMT400051796	Potato	cytosol	70.82	72.8
AT5G48640.1	Thale cress	cytosol	65.76	66.8
Bra037473.1-P	Field mustard	mitochondrion	54.09	66.51
CDY66082	Canola	cytosol	64.98	66.27
CDX86291	Canola	cytosol	64.98	66.27
CDY51052	Canola	cytosol	64.2	65.74
CDX85352	Canola	cytosol	63.81	65.08
CDY51053	Canola	cytosol	63.42	64.43
Bra020686.1-P	Field mustard	cytosol	63.42	64.43
CDY69301	Canola	cytosol	63.42	64.43
AT5G48630.2	Thale cress	cytosol, nucleus, plastid	63.81	64.06
Bra020685.1-P	Field mustard	cytosol	47.08	62.05
CDY05665	Canola	endoplasmic reticulum, extracellular	22.18	52.29
Os12t0485400-01	Rice	nucleus	27.24	12.89
Os01t0377500-01	Rice	nucleus	20.23	12.18
Os02t0133000-00	Rice	extracellular	19.84	11.44
Os02t0438200-01	Rice	nucleus	21.79	8.89

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.3	MapMan:15.3.3.4.4	EntrezGene:9272663	EMBL:AC108763	EMBL:AK072415
ProteinID:BAH94657.1	ProteinID:BAT08842.1	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:CyclinC/Ssn8	InterPro:Cyclin_N
EMBL:D86925	GO:GO:0000307	GO:GO:0003674	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005654	GO:GO:0006139	GO:GO:0006464	GO:GO:0007049	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016538	GO:GO:0016592	GO:GO:0019538
GO:GO:0030234	GO:GO:0045737	GO:GO:0045859	GO:GO:0045944	GO:GO:0051301	GO:GO:1901409
EnsemblPlantsGene:Os09g0504400	EnsemblPlants:Os09t0504400-01	UniProt:P93411	PFAM:PF00134	PIRSF:PIRSF028758	PANTHER:PTHR10026
PANTHER:PTHR10026:SF7	SMART:SM00385	SUPFAM:SSF47954	UniParc:UPI000012756D	RefSeq:XP_015611762.1	:

Description

C-type cyclin, cyclin CTranscription regulator cyclin domain containing protein. (Os09t0504400-01)

Coordinates

chr9:+:19498962..19503132

Molecular Weight (calculated)

30195.0 Da

IEP (calculated)

6.675

GRAVY (calculated)

-0.091

Length

257 amino acids

Sequence
(BLAST)

001: MAANFWTSSH CKQLLDQEDV DKVPQADSDR GITLEEFRLV KIHMSFHIWR LAQQVKVRQR VIATAVTYFR RVYTRKSMTE YDPRLVAPTC LYLASKVEES
101: TVQARLLVFY IKKMCASDEK YRFEIKDILE MEMKLLEALD YYLVVYHPYR PLLQLLQDAG ITDLTQFAWG IVNDTYKMDL ILIHPPYMIA LACIYIASVL
201: KDKDITLWFE ELRVDMNIVK NISMEILDFY DTYKIDPQRG LPEDKIAPVM NKLPSKA

Best Arabidopsis Sequence Match ( AT5G48630.1 )
(BLAST)

001: MASNFWTSTH YKELKDPEEV NVVHPLDAQR GISVEDFRLI KLHMSNYISK LAQHIKIRQR VVATAVTYMR RVYTRKSLTE YEPRLVAPTC LYLACKAEES
101: VVHAKLLVFY MKKLYADEKF RYEIKDILEM EMKVLEALNF YLVVFHPYRS LPEFLQDSGI NDTSMTHLTW GLVNDTYRMD LILIHPPFLI TLACIYIASV
201: HKEKDIKTWF EELSVDMNIV KNIAMEILDF YENHRLFTEE RVHAAFNKLA TNP

Arabidopsis Description

Cyclin family protein [Source:UniProtKB/TrEMBL;Acc:F4K359]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.