Factsheet for HORVU6Hr1G083890.3

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
peroxisome 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	peroxisome, plastid
ChloroP:	plastid
MultiLoc:	peroxisome
TargetP:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G332100.1	Wheat	peroxisome	84.16	99.22
TraesCS6B01G382700.1	Wheat	peroxisome	83.5	98.44
TraesCS6A01G349600.1	Wheat	peroxisome	83.5	98.44
EER97007	Sorghum	nucleus	78.88	93.0
Os09t0504400-01	Rice	nucleus	78.22	92.22
Zm00001d021031_P002	Maize	endoplasmic reticulum, vacuole	81.52	78.41
GSMUA_Achr7P02730_001	Banana	cytosol	67.99	78.33
VIT_00s0360g00050.t01	Wine grape	cytosol	61.06	73.71
KRH46635	Soybean	cytosol	61.06	73.12
Solyc06g083260.2.1	Tomato	cytosol, nucleus	60.07	72.8
PGSC0003DMT400051796	Potato	cytosol	60.07	72.8
KRG99632	Soybean	cytosol	60.73	72.73
AT5G48640.1	Thale cress	cytosol	55.78	66.8
CDX86291	Canola	cytosol	54.79	65.87
Bra037473.1-P	Field mustard	mitochondrion	45.21	65.55
CDX85352	Canola	cytosol	53.8	64.68
CDY66082	Canola	cytosol	53.8	64.68
CDY51052	Canola	cytosol	53.14	64.14
AT5G48630.2	Thale cress	cytosol, nucleus, plastid	53.8	63.67
CDY51053	Canola	cytosol	52.48	62.85
Bra020686.1-P	Field mustard	cytosol	52.48	62.85
CDY69301	Canola	cytosol	52.48	62.85
Bra020685.1-P	Field mustard	cytosol	39.6	61.54
CDY05665	Canola	endoplasmic reticulum, extracellular	18.15	50.46
HORVU6Hr1G056640.2	Barley	plastid	7.59	27.06
HORVU3Hr1G059980.2	Barley	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	18.48	14.58
HORVU4Hr1G021250.6	Barley	nucleus	21.78	13.78
HORVU2Hr1G083340.2	Barley	nucleus	21.78	13.58
HORVU4Hr1G021220.13	Barley	cytosol	19.47	13.41
HORVU5Hr1G038970.16	Barley	nucleus	23.43	13.03
HORVU0Hr1G007890.2	Barley	cytosol, nucleus	15.84	12.6
HORVU6Hr1G080430.3	Barley	nucleus	17.82	12.11
HORVU6Hr1G017740.2	Barley	nucleus	15.18	5.06

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.3	MapMan:15.3.3.4.4	UniProt:A0A287UZ38	InterPro:Cyclin-like	InterPro:Cyclin-like_sf
InterPro:CyclinC/Ssn8	InterPro:Cyclin_N	GO:GO:0003674	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005654	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016538	GO:GO:0016592	GO:GO:0019538	GO:GO:0030234
GO:GO:0045859	EnsemblPlantsGene:HORVU6Hr1G083890	EnsemblPlants:HORVU6Hr1G083890.3	PFAM:PF00134	PIRSF:PIRSF028758	PANTHER:PTHR10026
PANTHER:PTHR10026:SF7	SMART:SM00385	SUPFAM:SSF47954	TMHMM:TMhelix	UniParc:UPI000B471AFD	SEG:seg

Description

No Description!

Coordinates

chrchr6H:+:552895338..552903473

Molecular Weight (calculated)

35119.8 Da

IEP (calculated)

9.090

GRAVY (calculated)

-0.270

Length

303 amino acids

Sequence
(BLAST)

001: GPYLRDSRNR PGAPNPPSSS PNPELAPREP PPIPPARLLS GRRRSRMAAN FWASSHSKQL LDPEEVDVVP AADRERGITP VEFRLVKIHM SFHIWRLAQQ
101: VKVRQRVIAT AITYFRRVYT RKSMTEYDPR LVAPACLYLA SKVEESTVQA RLLVFYIKKM CGSDDKYRFE IKDILEMEMK LLEALDYYLV VYHPYRPLLQ
201: LLQDAGITDL TQFAWGLVND TYKMDLILIY PPYMIALACI YIASVLKDKD TTSWFEELRV DMNIVKNISM EILDFYDTYK IDPQRGLQED KIIPVMNKLP
301: SKA

Best Arabidopsis Sequence Match ( AT5G48630.1 )
(BLAST)

001: MASNFWTSTH YKELKDPEEV NVVHPLDAQR GISVEDFRLI KLHMSNYISK LAQHIKIRQR VVATAVTYMR RVYTRKSLTE YEPRLVAPTC LYLACKAEES
101: VVHAKLLVFY MKKLYADEKF RYEIKDILEM EMKVLEALNF YLVVFHPYRS LPEFLQDSGI NDTSMTHLTW GLVNDTYRMD LILIHPPFLI TLACIYIASV
201: HKEKDIKTWF EELSVDMNIV KNIAMEILDF YENHRLFTEE RVHAAFNKLA TNP

Arabidopsis Description

Cyclin family protein [Source:UniProtKB/TrEMBL;Acc:F4K359]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.