Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d038497_P001 | Maize | cytosol, extracellular, peroxisome | 37.8 | 89.44 |
| HORVU4Hr1G021250.6 | Barley | nucleus | 98.69 | 78.5 |
| TraesCS4A01G199300.1 | Wheat | nucleus | 92.13 | 74.21 |
| TraesCS4B01G116000.1 | Wheat | nucleus | 92.13 | 73.28 |
| TraesCS4D01G113600.1 | Wheat | nucleus | 92.13 | 73.12 |
| HORVU2Hr1G083340.2 | Barley | nucleus | 82.94 | 65.02 |
| EES11326 | Sorghum | nucleus | 80.31 | 62.45 |
| Zm00001d026030_P014 | Maize | nucleus | 78.74 | 61.22 |
| EER88086 | Sorghum | nucleus | 67.72 | 54.2 |
| Zm00001d027376_P002 | Maize | nucleus, plastid | 78.48 | 53.58 |
| GSMUA_Achr6P30140_001 | Banana | nucleus | 67.98 | 51.08 |
| GSMUA_Achr6P31620_001 | Banana | cytosol | 60.89 | 45.22 |
| HORVU5Hr1G038970.16 | Barley | nucleus | 60.1 | 42.02 |
| KRH50485 | Soybean | nucleus | 61.15 | 41.09 |
| VIT_19s0027g01670.t01 | Wine grape | nucleus | 67.19 | 41.09 |
| KRG89442 | Soybean | nucleus | 61.15 | 41.02 |
| VIT_00s0125g00270.t01 | Wine grape | nucleus | 62.73 | 40.78 |
| KRG89447 | Soybean | nucleus | 59.58 | 40.04 |
| CDY26395 | Canola | nucleus | 55.12 | 39.92 |
| KRH13708 | Soybean | nucleus | 63.25 | 39.77 |
| Bra020954.1-P | Field mustard | nucleus | 54.86 | 39.66 |
| CDX76472 | Canola | nucleus | 54.86 | 39.51 |
| CDY09329 | Canola | nucleus | 54.59 | 39.17 |
| KRH43745 | Soybean | nucleus | 62.73 | 39.12 |
| AT4G19600.1 | Thale cress | nucleus | 55.38 | 39.0 |
| CDX99359 | Canola | nucleus | 54.07 | 38.58 |
| Solyc10g078180.1.1 | Tomato | nucleus | 62.2 | 38.16 |
| Bra021950.1-P | Field mustard | nucleus | 55.38 | 37.75 |
| Bra025087.1-P | Field mustard | nucleus | 56.17 | 37.74 |
| CDY65933 | Canola | nucleus | 55.12 | 36.97 |
| CDY39416 | Canola | nucleus | 56.17 | 36.96 |
| AT5G45190.2 | Thale cress | nucleus | 57.22 | 36.95 |
| CDX82583 | Canola | nucleus | 54.86 | 36.86 |
| AT1G35440.1 | Thale cress | cytosol | 22.05 | 34.01 |
| CDX71123 | Canola | nucleus | 23.36 | 33.71 |
| HORVU4Hr1G021220.13 | Barley | cytosol | 37.27 | 32.27 |
| Bra006723.1-P | Field mustard | nucleus | 22.31 | 32.2 |
| CDX88692 | Canola | nucleus | 22.31 | 32.2 |
| CDX99363 | Canola | nucleus | 33.86 | 32.01 |
| AT4G19560.1 | Thale cress | nucleus | 38.58 | 31.96 |
| Bra013402.1-P | Field mustard | nucleus | 33.07 | 31.11 |
| CDX78940 | Canola | nucleus | 33.07 | 31.11 |
| CDY24526 | Canola | cytosol, nucleus, peroxisome | 24.67 | 29.75 |
| Bra031514.1-P | Field mustard | cytosol | 24.41 | 29.43 |
| CDY54138 | Canola | cytosol | 24.41 | 29.43 |
| HORVU6Hr1G056640.2 | Barley | plastid | 3.67 | 16.47 |
| HORVU3Hr1G059980.2 | Barley | endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole | 16.27 | 16.15 |
| HORVU6Hr1G083890.3 | Barley | plastid | 12.6 | 15.84 |
| HORVU6Hr1G080430.3 | Barley | nucleus | 18.11 | 15.47 |
| HORVU6Hr1G017740.2 | Barley | nucleus | 28.87 | 12.1 |
Protein Annotations
| EnsemblPlants:HORVU0Hr1G007890.2 | EnsemblPlantsGene:HORVU0Hr1G007890 | Gene3D:1.10.472.10 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_N |
| PANTHER:PTHR10026 | PANTHER:PTHR10026:SF103 | PFAM:PF00134 | SMART:SM00385 | SUPFAM:SSF47954 | UniParc:UPI000B47FCF5 |
| UniProt:A0A287DXK2 | MapMan:13.1.1.1.9 | : | : | : | : |
Description
No Description!
Coordinates
chrchrUn:-:46556325..46558823
Molecular Weight (calculated)
43088.0 Da
IEP (calculated)
7.528
GRAVY (calculated)
-0.825
Length
381 amino acids
Sequence
(BLAST)
(BLAST)
001: PHQRWDLQTI ATVCMFLAGK VEETPRPLKD VILISYEIIH KKDTAAVARI KQKEVYEQQK ELILIGERAV LITLGFDLNV HHPYKPLVEA IKKFKVAQNA
101: LAQVAWNFVN DGLRTSLCLQ FKPNHITAGA IFLAAKFLKV KLPSDGEKVW WQEFDVTPRQ LEEVSNQMLE LYEQNRVVPP PSQGNDTEGS SASVVNPRAL
201: GKAPGAAEER HGHENHQAPR QSSMAGPPEK KNSNQRIPKV EAKDGIASSN EGPNMSSSMD AMKKIDKDKV KAALEKRRKS KGDAGRKVDI MDDDDLIERE
301: LEHGVEMAAK DEKKHDRRQS WPQPLHQSAG RTAENAEEGE LSMDSQEYLS SVTELDDRKR KDAYDHRSHD HVERDHKRVR S
101: LAQVAWNFVN DGLRTSLCLQ FKPNHITAGA IFLAAKFLKV KLPSDGEKVW WQEFDVTPRQ LEEVSNQMLE LYEQNRVVPP PSQGNDTEGS SASVVNPRAL
201: GKAPGAAEER HGHENHQAPR QSSMAGPPEK KNSNQRIPKV EAKDGIASSN EGPNMSSSMD AMKKIDKDKV KAALEKRRKS KGDAGRKVDI MDDDDLIERE
301: LEHGVEMAAK DEKKHDRRQS WPQPLHQSAG RTAENAEEGE LSMDSQEYLS SVTELDDRKR KDAYDHRSHD HVERDHKRVR S
001: MDEALNENAS GSESDASSVA SNLHDDEIIP WFFSREEIER NSPSRRDGID LKTETRLRDS YCTFLEILGE RLKVPQVTIA TAIFFCHRFF LRQSHAKNDR
101: QTIATVCMLL AGKVEETPVT LEDVIIASYE RIHKKDLAGA QRKEVYDQQK ELVLIGEELV LSTLNFDLCI SHPYKPLVEA IKKYMVEDAK TQLAQFAWNF
201: VNDCLRTTLC LQYQPHHIAA GAILLAAELP TVDLQSYREV LCQEFDITPC QLEDIRGQIL ELYERIPTSQ ESKVESSGGV AVVHQPISRD MASTEKCPSS
301: DIEGGSSQVN LSQSDDHSVH DGSRSEGIGE VNSESEAQKN LQDHSVGNIM VEKSDDVGVV QLKKDLQLHQ EEVESKQEKD KKSFEKDITK IDLMDEKDLT
401: ESEVEDEINK TMQTGRQIFM KVEDPDDNMT VEHSEIRNAN NSGVDDELVA DTCLINDSDL
101: QTIATVCMLL AGKVEETPVT LEDVIIASYE RIHKKDLAGA QRKEVYDQQK ELVLIGEELV LSTLNFDLCI SHPYKPLVEA IKKYMVEDAK TQLAQFAWNF
201: VNDCLRTTLC LQYQPHHIAA GAILLAAELP TVDLQSYREV LCQEFDITPC QLEDIRGQIL ELYERIPTSQ ESKVESSGGV AVVHQPISRD MASTEKCPSS
301: DIEGGSSQVN LSQSDDHSVH DGSRSEGIGE VNSESEAQKN LQDHSVGNIM VEKSDDVGVV QLKKDLQLHQ EEVESKQEKD KKSFEKDITK IDLMDEKDLT
401: ESEVEDEINK TMQTGRQIFM KVEDPDDNMT VEHSEIRNAN NSGVDDELVA DTCLINDSDL
Arabidopsis Description
CYCT1-2Cyclin-T1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q56YF8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.