Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- endoplasmic reticulum 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX82583 | Canola | nucleus | 85.59 | 89.07 |
| Bra025087.1-P | Field mustard | nucleus | 85.59 | 89.07 |
| CDY26395 | Canola | nucleus | 78.98 | 88.59 |
| Bra021950.1-P | Field mustard | nucleus | 83.56 | 88.19 |
| CDY39416 | Canola | nucleus | 85.59 | 87.22 |
| Zm00001d038497_P001 | Maize | cytosol, extracellular, peroxisome | 23.56 | 86.34 |
| CDY65933 | Canola | nucleus | 82.2 | 85.39 |
| AT4G19600.1 | Thale cress | nucleus | 72.54 | 79.11 |
| Zm00001d027790_P001 | Maize | cytosol | 31.36 | 68.52 |
| EES11326 | Sorghum | nucleus | 49.66 | 59.8 |
| TraesCS4A01G199300.1 | Wheat | nucleus | 47.63 | 59.41 |
| Zm00001d026030_P014 | Maize | nucleus | 49.15 | 59.18 |
| HORVU2Hr1G083340.2 | Barley | nucleus | 48.31 | 58.64 |
| TraesCS4D01G113600.1 | Wheat | nucleus | 47.63 | 58.54 |
| TraesCS2A01G323500.1 | Wheat | nucleus | 48.14 | 58.32 |
| HORVU4Hr1G021250.6 | Barley | nucleus | 47.29 | 58.25 |
| TraesCS4B01G116000.1 | Wheat | nucleus | 47.29 | 58.25 |
| TraesCS2B01G358600.1 | Wheat | nucleus | 47.97 | 58.11 |
| TraesCS2D01G339400.1 | Wheat | nucleus | 48.31 | 57.69 |
| HORVU0Hr1G007890.2 | Barley | cytosol, nucleus | 36.95 | 57.22 |
| KRH50485 | Soybean | nucleus | 54.58 | 56.79 |
| KRG89442 | Soybean | nucleus | 54.24 | 56.34 |
| TraesCS4A01G199600.1 | Wheat | nucleus | 39.49 | 56.01 |
| TraesCS4B01G115800.1 | Wheat | nucleus | 39.32 | 55.77 |
| KRG89447 | Soybean | nucleus | 53.56 | 55.73 |
| Zm00001d020158_P001 | Maize | nucleus | 38.64 | 55.47 |
| EER88086 | Sorghum | nucleus | 44.75 | 55.46 |
| VIT_00s0125g00270.t01 | Wine grape | nucleus | 54.24 | 54.61 |
| TraesCS4D01G113400.1 | Wheat | nucleus | 40.85 | 54.28 |
| AT1G35440.1 | Thale cress | cytosol | 22.37 | 53.44 |
| Zm00001d027376_P002 | Maize | nucleus, plastid | 49.66 | 52.51 |
| GSMUA_Achr6P04070_001 | Banana | nucleus | 42.88 | 52.06 |
| TraesCS5A01G103900.2 | Wheat | nucleus | 46.27 | 51.9 |
| Os12t0485400-01 | Rice | nucleus | 47.63 | 51.75 |
| HORVU5Hr1G038970.16 | Barley | nucleus | 47.46 | 51.38 |
| TraesCS5D01G121900.1 | Wheat | nucleus | 47.8 | 50.36 |
| AT4G19560.1 | Thale cress | nucleus | 38.64 | 49.57 |
| TraesCS5B01G112100.2 | Wheat | nucleus | 48.81 | 49.48 |
| HORVU4Hr1G021220.13 | Barley | cytosol | 33.56 | 45.0 |
| OQU93178 | Sorghum | nucleus | 43.56 | 44.01 |
| AT1G27630.1 | Thale cress | cytosol | 22.71 | 42.27 |
| KXG23456 | Sorghum | nucleus | 41.53 | 41.67 |
| AT2G26430.1 | Thale cress | cytosol | 17.12 | 24.28 |
| AT5G48630.2 | Thale cress | cytosol, nucleus, plastid | 10.51 | 24.22 |
| AT5G48640.1 | Thale cress | cytosol | 10.34 | 24.11 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.9 | MapMan:15.3.2.1.2 | EntrezGene:834555 | ProteinID:AED95215.1 | ArrayExpress:AT5G45190 |
| EnsemblPlantsGene:AT5G45190 | RefSeq:AT5G45190 | TAIR:AT5G45190 | RefSeq:AT5G45190-TAIR-G | EnsemblPlants:AT5G45190.2 | TAIR:AT5G45190.2 |
| Unigene:At.30028 | ncoils:Coil | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_N | UniProt:F4KD43 |
| GO:GO:0000003 | GO:GO:0005575 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009605 | GO:GO:0009607 |
| GO:GO:0009615 | GO:GO:0009653 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009987 | GO:GO:0010090 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0030154 | GO:GO:0048366 | GO:GO:0050792 |
| RefSeq:NP_001154763.1 | PFAM:PF00134 | PIRSF:PIRSF036580 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR10026 | PANTHER:PTHR10026:SF103 | SMART:SM00385 | SUPFAM:SSF47954 |
| TMHMM:TMhelix | UniParc:UPI0001A7B2FA | SEG:seg | : | : | : |
Description
Cyclin family protein [Source:UniProtKB/TrEMBL;Acc:F4KD43]
Coordinates
chr5:-:18277620..18281874
Molecular Weight (calculated)
66490.8 Da
IEP (calculated)
7.062
GRAVY (calculated)
-0.905
Length
590 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGVLAGECS YSESGVSSHS RNSHEKQEEV SRWYFGRKEI EENSPSRLDG IDLKKETYLR KSYCTFLQDL GMRLKLAWFL DIIAYVCTDV TIATAIIFCH
101: RFFFRQSHAK NDRRTIATVC MFLAGKVEET PRPLKDVIFV SYEIINKKDP GASQKIKQKE VYEQQKELIL NGEKIVLSTL GFDLNVYHPY KPLVEAIKKF
201: KVAQNALAQV AWNFVNDGLR TSLCLQFKPH HIAAGAIFLA AKFLKVKLPS DGEKVWWQEF DVTPRQLEDV SNQMLELYEQ NRVPASQGSE VESSVGGGSA
301: QRPGSRNAVS TDEHVGSRQT SSVRSTHEQS NSDNHGGSSK GVLNQNNENG GGEAANVSVD NKEEIERETK ESSLHLESHP AHKDNVREAP HNSRPLVEGP
401: GKDNSEREGG ELQDDGAVHK SRNVDVGDAL ISQSPKDLKL LRDKVKAKRE KAKKLLGERT RKKDLMDEDD LIERELEDVQ LAVEDEKTKE RKVQSRPKAE
501: NSDLMGTEHG EILDVKGEVK NTEEGEMVNN NVSPMMHSRK RKMGSPPEKQ SEGKRRHNSE NGEESHKTSR GSSHHGDREH RRHSQENNHS
101: RFFFRQSHAK NDRRTIATVC MFLAGKVEET PRPLKDVIFV SYEIINKKDP GASQKIKQKE VYEQQKELIL NGEKIVLSTL GFDLNVYHPY KPLVEAIKKF
201: KVAQNALAQV AWNFVNDGLR TSLCLQFKPH HIAAGAIFLA AKFLKVKLPS DGEKVWWQEF DVTPRQLEDV SNQMLELYEQ NRVPASQGSE VESSVGGGSA
301: QRPGSRNAVS TDEHVGSRQT SSVRSTHEQS NSDNHGGSSK GVLNQNNENG GGEAANVSVD NKEEIERETK ESSLHLESHP AHKDNVREAP HNSRPLVEGP
401: GKDNSEREGG ELQDDGAVHK SRNVDVGDAL ISQSPKDLKL LRDKVKAKRE KAKKLLGERT RKKDLMDEDD LIERELEDVQ LAVEDEKTKE RKVQSRPKAE
501: NSDLMGTEHG EILDVKGEVK NTEEGEMVNN NVSPMMHSRK RKMGSPPEKQ SEGKRRHNSE NGEESHKTSR GSSHHGDREH RRHSQENNHS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.