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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:nucleus, plastid
BaCelLo:nucleus
MultiLoc:nucleus
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY26395 Canola nucleus 88.38 95.44
Bra021950.1-P Field mustard nucleus 92.96 94.45
Zm00001d038497_P001 Maize cytosol, extracellular, peroxisome 23.94 84.47
CDX82583 Canola nucleus 82.57 82.72
CDY39416 Canola nucleus 83.98 82.38
AT5G45190.2 Thale cress nucleus 85.39 82.2
CDX76472 Canola nucleus 71.13 76.37
CDY09329 Canola nucleus 71.13 76.08
CDX99359 Canola nucleus 69.89 74.34
Zm00001d027790_P001 Maize cytosol 32.22 67.78
TraesCS4A01G199300.1 Wheat nucleus 48.59 58.35
EES11326 Sorghum nucleus 49.82 57.76
TraesCS4D01G113600.1 Wheat nucleus 48.59 57.5
Zm00001d026030_P014 Maize nucleus 49.47 57.35
TraesCS4B01G116000.1 Wheat nucleus 48.24 57.2
HORVU4Hr1G021250.6 Barley nucleus 48.24 57.2
HORVU2Hr1G083340.2 Barley nucleus 48.42 56.58
TraesCS2A01G323500.1 Wheat nucleus 48.24 56.26
KRH50485 Soybean nucleus 56.16 56.26
TraesCS2B01G358600.1 Wheat nucleus 48.06 56.06
TraesCS2D01G339400.1 Wheat nucleus 48.42 55.67
KRG89442 Soybean nucleus 55.63 55.63
HORVU0Hr1G007890.2 Barley cytosol, nucleus 36.97 55.12
TraesCS4A01G199600.1 Wheat nucleus 40.32 55.05
KRG89447 Soybean nucleus 54.75 54.85
Zm00001d020158_P001 Maize nucleus 39.61 54.74
TraesCS4B01G115800.1 Wheat nucleus 39.96 54.57
EER88086 Sorghum nucleus 45.07 53.78
VIT_00s0125g00270.t01 Wine grape nucleus 54.93 53.24
TraesCS4D01G113400.1 Wheat nucleus 41.37 52.93
CDX99363 Canola nucleus 36.62 51.61
Os12t0485400-01 Rice nucleus 48.94 51.2
GSMUA_Achr6P04070_001 Banana nucleus 43.31 50.62
Zm00001d027376_P002 Maize nucleus, plastid 49.65 50.54
CDX78940 Canola nucleus 35.74 50.12
CDY54138 Canola cytosol 27.82 50.0
TraesCS5A01G103900.2 Wheat nucleus 46.13 49.81
CDX71123 Canola nucleus 23.06 49.62
CDY24526 Canola cytosol, nucleus, peroxisome 27.46 49.37
HORVU5Hr1G038970.16 Barley nucleus 47.36 49.36
CDX88692 Canola nucleus 22.71 48.86
TraesCS5D01G121900.1 Wheat nucleus 48.06 48.75
TraesCS5B01G112100.2 Wheat nucleus 49.47 48.28
HORVU4Hr1G021220.13 Barley cytosol 34.51 44.55
CDY03933 Canola cytosol 24.12 43.77
CDY60279 Canola cytosol 24.12 43.77
OQU93178 Sorghum nucleus 44.37 43.15
KXG23456 Sorghum nucleus 42.25 40.82
CDY11776 Canola cytosol 22.54 40.0
CDX90099 Canola nucleus 22.54 39.75
CDX86291 Canola cytosol 11.44 25.79
CDX85352 Canola cytosol 11.27 25.4
CDY66082 Canola cytosol 11.27 25.4
CDY51052 Canola cytosol 11.09 25.1
CDY03883 Canola nucleus 17.78 24.22
CDY51595 Canola nucleus 17.61 24.21
CDY51053 Canola cytosol 10.74 24.11
CDY69301 Canola cytosol 10.74 24.11
CDY05665 Canola endoplasmic reticulum, extracellular 4.23 22.02
CDY27590 Canola cytosol 13.38 12.22
CDX84949 Canola cytosol 5.11 8.26
Protein Annotations
Gene3D:1.10.472.10MapMan:13.1.1.1.9MapMan:15.3.2.1.2GO:A0A078JE92UniProt:A0A078JE92EnsemblPlants:CDY65933
ProteinID:CDY65933ProteinID:CDY65933.1ncoils:CoilInterPro:Cyclin-likeInterPro:Cyclin-like_sfInterPro:Cyclin_N
GO:GO:0005575GO:GO:0016020GO:GO:0016021EnsemblPlantsGene:GSBRNA2T00051031001PFAM:PF00134PIRSF:PIRSF036580
PANTHER:PTHR10026PANTHER:PTHR10026:SF103SMART:SM00385SUPFAM:SSF47954TMHMM:TMhelixUniParc:UPI0004EECCBD
SEG:seg:::::
Description
BnaC02g47480DBnaC02g47480D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JE92]
Coordinates
chrLK035009:-:1548..4864
Molecular Weight (calculated)
63609.6 Da
IEP (calculated)
7.312
GRAVY (calculated)
-0.810
Length
568 amino acids
Sequence
(BLAST)
001: MAGVLAGECS YGESGVSSHS RNSHEKQDEL SRWYFGRKEI EENSPSRLDG IDLKKETYLR KSYCTFLQDL GMRLKVHTFV KVVFYLIPQV TIATAIIFCH
101: RFFFRQSHAK NDRRTIATVC MFLAGKVEET PRPLNNVISV SYEIINKKDP GAAQKIKQKE VYEQQKELIL NGEKIVLSTL GFDLNVLHPY KPLVEAIKKF
201: KVAQNALAQV AWNFVNDGLR TSLCLQFQPH HIAAGAIFLA AKFLKVKLPS DGEKVWWQEF DVTPRQLEDV SNQMLELYEQ NRVPASQGSE VESSVGGGSA
301: HRPGSRNATS TDEHHVGSRQ ASARSSHEPS NSDNHGGSSK GGLDQNNGNG DVEAATVSVD HKEESPHHEN QQVNKDNVRE VPHNFRPLVE GAGKDNSERE
401: SGELPDYGAV HKSRNVETVV VAPIGQSPKD LKMLRDKVKA KREKAKKLLG ERTMKKDLID EDDFIERELE DVELAVEDEN AKQKNVPKAE NSDLMGTEHG
501: AVKNAEEGEM VNDVSQMMHS RKRKMGSPPE NQSEGKRRLS SENGEQGHKT SRGSSSSHHG DREHRRHS
Best Arabidopsis Sequence Match ( AT5G45190.2 )
(BLAST)
001: MAGVLAGECS YSESGVSSHS RNSHEKQEEV SRWYFGRKEI EENSPSRLDG IDLKKETYLR KSYCTFLQDL GMRLKLAWFL DIIAYVCTDV TIATAIIFCH
101: RFFFRQSHAK NDRRTIATVC MFLAGKVEET PRPLKDVIFV SYEIINKKDP GASQKIKQKE VYEQQKELIL NGEKIVLSTL GFDLNVYHPY KPLVEAIKKF
201: KVAQNALAQV AWNFVNDGLR TSLCLQFKPH HIAAGAIFLA AKFLKVKLPS DGEKVWWQEF DVTPRQLEDV SNQMLELYEQ NRVPASQGSE VESSVGGGSA
301: QRPGSRNAVS TDEHVGSRQT SSVRSTHEQS NSDNHGGSSK GVLNQNNENG GGEAANVSVD NKEEIERETK ESSLHLESHP AHKDNVREAP HNSRPLVEGP
401: GKDNSEREGG ELQDDGAVHK SRNVDVGDAL ISQSPKDLKL LRDKVKAKRE KAKKLLGERT RKKDLMDEDD LIERELEDVQ LAVEDEKTKE RKVQSRPKAE
501: NSDLMGTEHG EILDVKGEVK NTEEGEMVNN NVSPMMHSRK RKMGSPPEKQ SEGKRRHNSE NGEESHKTSR GSSHHGDREH RRHSQENNHS
Arabidopsis Description
Cyclin family protein [Source:UniProtKB/TrEMBL;Acc:F4KD43]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.