Factsheet for Os12t0485400-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d027790_P001	Maize	cytosol	38.49	77.41
TraesCS5A01G103900.2	Wheat	nucleus	69.8	72.05
TraesCS5D01G121900.1	Wheat	nucleus	70.72	68.57
HORVU5Hr1G038970.16	Barley	nucleus	68.32	68.07
Zm00001d020158_P001	Maize	nucleus	51.2	67.64
TraesCS5B01G112100.2	Wheat	nucleus	71.82	67.01
GSMUA_Achr6P30140_001	Banana	nucleus	56.17	60.16
OQU93178	Sorghum	nucleus	62.43	58.05
GSMUA_Achr6P31620_001	Banana	cytosol	53.96	57.12
KRH50485	Soybean	nucleus	57.27	54.85
KXG23456	Sorghum	nucleus	59.3	54.76
KRG89442	Soybean	nucleus	56.91	54.4
KRG89447	Soybean	nucleus	56.35	53.97
Bra020954.1-P	Field mustard	nucleus	51.01	52.56
VIT_19s0027g01670.t01	Wine grape	nucleus	60.22	52.49
CDX76472	Canola	nucleus	51.01	52.36
CDY09329	Canola	nucleus	51.2	52.35
CDY26395	Canola	nucleus	50.64	52.28
AT4G19600.1	Thale cress	nucleus	51.38	51.57
VIT_00s0125g00270.t01	Wine grape	nucleus	55.06	51.02
CDX71123	Canola	nucleus	24.68	50.76
Solyc10g078180.1.1	Tomato	nucleus	57.83	50.56
CDX99359	Canola	nucleus	49.54	50.37
AT1G35440.1	Thale cress	cytosol	22.84	50.2
Bra021950.1-P	Field mustard	nucleus	51.2	49.73
Bra025087.1-P	Field mustard	nucleus	51.75	49.56
CDX88692	Canola	nucleus	23.94	49.24
KRH43745	Soybean	nucleus	55.25	49.1
KRH13708	Soybean	nucleus	54.7	49.01
CDY65933	Canola	nucleus	51.2	48.94
Bra006723.1-P	Field mustard	nucleus	23.76	48.86
CDX82583	Canola	nucleus	51.01	48.85
CDY39416	Canola	nucleus	51.75	48.53
AT5G45190.2	Thale cress	nucleus	51.75	47.63
CDX99363	Canola	nucleus	34.25	46.15
CDY24526	Canola	cytosol, nucleus, peroxisome	26.52	45.57
CDX78940	Canola	nucleus	33.89	45.43
Bra013402.1-P	Field mustard	nucleus	33.89	45.43
CDY54138	Canola	cytosol	26.34	45.25
Bra031514.1-P	Field mustard	cytosol	26.34	45.25
AT4G19560.1	Thale cress	nucleus	37.57	44.35
Os02t0133000-00	Rice	extracellular	27.26	33.18
Os09t0504400-01	Rice	nucleus	12.89	27.24
Os02t0438200-01	Rice	nucleus	30.39	26.19
Os01t0377500-01	Rice	nucleus	19.52	24.82

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.9	MapMan:15.3.2.1.2	EntrezGene:4352229	ProteinID:ABA98525.1	ProteinID:ABG22024.1
EMBL:AK100044	EMBL:AK100051	ProteinID:BAF29800.1	ProteinID:BAT17171.1	InterPro:Cyclin-like	InterPro:Cyclin-like_sf
InterPro:Cyclin_N	GO:GO:0000307	GO:GO:0003674	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006464	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016538	GO:GO:0019538	GO:GO:0030234	GO:GO:0045737
GO:GO:0045944	GO:GO:0051301	GO:GO:1901409	EnsemblPlantsGene:Os12g0485400	EnsemblPlants:Os12t0485400-01	PFAM:PF00134
PIRSF:PIRSF036580	PANTHER:PTHR10026	PANTHER:PTHR10026:SF103	UniProt:Q2QQS5	SMART:SM00385	SUPFAM:SSF47954
UniParc:UPI00006810F7	RefSeq:XP_015619900.1	RefSeq:XP_015619901.1	SEG:seg	:	:

Description

CYCLIN-T1-6Similar to Cyclin T1 (Fragment). (Os12t0485400-01)

Coordinates

chr12:+:17955781..17964284

Molecular Weight (calculated)

61394.8 Da

IEP (calculated)

7.376

GRAVY (calculated)

-0.943

Length

543 amino acids

Sequence
(BLAST)

001: MAMMPSDSSH HGIVENSPYR TTQGRNEETG ELGASWYFSR KEIEENSPSR RDGIDLKKES YLRKSYCTFL QDLGMRLKVP QVTIATAIVF CHRFYLRQSH
101: AKNDRRTIAT VCMFLAGKVE ETPRPLKDVI LVSYEIIHKK DPAAGQRIKQ KEVYDQQKEL ILLAERVVLA TLGFDLNVHH PYKPLVEAIR KFKVAQNALA
201: QVAWNFVNDG LRTSLCLQFK PHHIAAGAIF LAAKFLKVKL PSDGEKVWWQ EFDVTPRQLE EVSNQMLELY EQNCAAQAQP SHGNEAEGSS ASVPNQRVSV
301: KSEETPLPHQ SKQSSSQHST GAPSHHGVEH SNLEKQTVDQ KMLQNDNGDH GSNKTRSNQS GSRVDFGAND GLHHDKQSMT ENKNLPSHGN SSEIRDVNRN
401: GNDGTNVTSL MVNKIDKDKV KAQMEKQRKL KGDVARKVEV IDDDDDLERQ LEHDIELAVE DNKIKQERKQ SSPHVMHRGD HRNADQVTGN GHLGKQNTPE
501: TAQDAPMDDI KEQRNSHGSK HHDSHDTAHE RGERDYKRPR PEG

Best Arabidopsis Sequence Match ( AT5G45190.1 )
(BLAST)

001: MAGVLAGECS YSESGVSSHS RNSHEKQEEV SRWYFGRKEI EENSPSRLDG IDLKKETYLR KSYCTFLQDL GMRLKVPQVT IATAIIFCHR FFFRQSHAKN
101: DRRTIATVCM FLAGKVEETP RPLKDVIFVS YEIINKKDPG ASQKIKQKEV YEQQKELILN GEKIVLSTLG FDLNVYHPYK PLVEAIKKFK VAQNALAQVA
201: WNFVNDGLRT SLCLQFKPHH IAAGAIFLAA KFLKVKLPSD GEKVWWQEFD VTPRQLEDVS NQMLELYEQN RVPASQGSEV ESSVGGGSAQ RPGSRNAVST
301: DEHVGSRQTS SVRSTHEQSN SDNHGGSSKG VLNQNNENGG GEAANVSVDN KEEIERETKE SSLHLESHPA HKDNVREAPH NSRPLVEGPG KDNSEREGGE
401: LQDDGAVHKS RNVDVGDALI SQSPKDLKLL RDKVKAKREK AKKLLGERTR KKDLMDEDDL IERELEDVQL AVEDEKTKER KVQSRPKAEN SDLMGTEHGE
501: ILDVKGEVKN TEEGEMVNNN VSPMMHSRKR KMGSPPEKQS EGKRRHNSEN GEESHKTSRG SSHHGDREHR RHSQENNHS

Arabidopsis Description

Cyclin family protein [Source:UniProtKB/TrEMBL;Acc:F4KD43]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.