Factsheet for Os02t0133000-00

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

extracellular: 24083427

msms PMID: 24083427 doi

T Shinano, T Yoshimura, T Watanabe, Y Unno, M Osaki, Y Nanjo, S Komatsu

Agricultural Radiation Research Center, NARO Tohoku Agricultural Research Center , 50, Harajyukuminami, Arai, Fukushima 960-2156, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0201000-01
Os08t0453800-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27630.1	Os01t0201000-01	AT5G10270.1	12678503
AT1G27630.1	Os08t0453800-00	AT5G10270.1	12678503
AT1G27630.1	Os01t0201000-01	AT5G10270.1	20706207
AT1G27630.1	Os08t0453800-00	AT5G10270.1	20706207
AT1G27630.1	Os01t0201000-01	AT5G64960.1	12678503
AT1G27630.1	Os08t0453800-00	AT5G64960.1	12678503
AT1G27630.1	Os01t0201000-01	AT5G64960.1	20706207
AT1G27630.1	Os08t0453800-00	AT5G64960.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG29406	Sorghum	cytosol	58.52	47.2
Zm00001d015164_P001	Maize	cytosol	56.28	46.14
GSMUA_Achr3P20770_001	Banana	nucleus	37.22	39.71
GSMUA_Achr8P18640_001	Banana	nucleus	36.77	39.61
AT1G27630.1	Thale cress	cytosol	27.13	38.17
CDY03933	Canola	cytosol	26.68	38.02
Bra030056.1-P	Field mustard	cytosol	26.23	37.38
CDY60279	Canola	cytosol	26.23	37.38
Bra010927.1-P	Field mustard	nucleus	26.01	36.25
CDX90099	Canola	nucleus	26.01	36.02
CDY11776	Canola	cytosol	25.78	35.94
TraesCS6A01G096600.1	Wheat	nucleus	55.16	34.89
VIT_18s0001g12980.t01	Wine grape	nucleus	34.08	34.39
Solyc07g032480.2.1	Tomato	nucleus	31.17	33.66
PGSC0003DMT400044127	Potato	nucleus	31.39	33.02
TraesCS6B01G125000.1	Wheat	nucleus	55.38	32.76
TraesCS6D01G087700.1	Wheat	nucleus	55.16	29.43
Os02t0438200-01	Rice	nucleus	39.69	28.1
Os12t0485400-01	Rice	nucleus	33.18	27.26
HORVU6Hr1G017740.2	Barley	nucleus	50.22	24.64
Os01t0377500-01	Rice	nucleus	20.85	21.78
Os09t0504400-01	Rice	nucleus	11.44	19.84

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.9	EntrezGene:4328207	ProteinID:BAD07997.1	ProteinID:BAF07714.2	ProteinID:BAS76837.1
InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_N	ProteinID:EAZ21639.1	GO:GO:0000307	GO:GO:0003674
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006464
GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016538
GO:GO:0019538	GO:GO:0030234	GO:GO:0045737	GO:GO:0045944	GO:GO:0051301	GO:GO:1901409
EnsemblPlantsGene:Os02g0133000	EnsemblPlants:Os02t0133000-00	PFAM:PF00134	PIRSF:PIRSF036580	PANTHER:PTHR10026	PANTHER:PTHR10026:SF76
UniProt:Q0E474	SMART:SM00385	SUPFAM:SSF47954	UniParc:UPI0000236876	RefSeq:XP_015627068.1	:

Description

CYCLIN-T1-3Cyclin-T1-1. (Os02t0133000-00)

Coordinates

chr2:-:1734447..1737461

Molecular Weight (calculated)

50777.5 Da

IEP (calculated)

10.337

GRAVY (calculated)

-0.439

Length

446 amino acids

Sequence
(BLAST)

001: MGEGAAGSWY VTRDEVERGS PSRRDGVGAA KEAELRATYC SFIRDVGLRL QLPQVTIATA TLLCHRFYLR QSHAKNEWQT VATVCVFLAS KIEDTPCPLQ
101: RVIIVAYETM YRKDCNAAHR IYQKEVLEKQ KELILVGETL LLSTIRFDFN IQHPYEPLKL ALKKLGIFQM EVKQVAVNLI NDAIRTTLVV QFKPHYIAAG
201: SLYLAAKFNN FRLPSDGKVW WHEFDVAPKQ LQAVIQQMTE LFMGRNPCSM GPAIRPPPTP SLMERQQVIR PPPTPTLMER QPIIRPLPTP TLMENQHITH
301: SLGAVMRHTH SSIRSLSNNF DREASRSLPL NIPANRKSTV CPARNEGNQS LRMHMGHSNG SDARFEKQYS RGALKADHVY HVVSGQKDLH VTGIRDLVRQ
401: KRTFHEVGEH PAPIDKSDTK SWIRKRHGRN VIVFDTKSSS WKKQKL

Best Arabidopsis Sequence Match ( AT5G45190.1 )
(BLAST)

001: MAGVLAGECS YSESGVSSHS RNSHEKQEEV SRWYFGRKEI EENSPSRLDG IDLKKETYLR KSYCTFLQDL GMRLKVPQVT IATAIIFCHR FFFRQSHAKN
101: DRRTIATVCM FLAGKVEETP RPLKDVIFVS YEIINKKDPG ASQKIKQKEV YEQQKELILN GEKIVLSTLG FDLNVYHPYK PLVEAIKKFK VAQNALAQVA
201: WNFVNDGLRT SLCLQFKPHH IAAGAIFLAA KFLKVKLPSD GEKVWWQEFD VTPRQLEDVS NQMLELYEQN RVPASQGSEV ESSVGGGSAQ RPGSRNAVST
301: DEHVGSRQTS SVRSTHEQSN SDNHGGSSKG VLNQNNENGG GEAANVSVDN KEEIERETKE SSLHLESHPA HKDNVREAPH NSRPLVEGPG KDNSEREGGE
401: LQDDGAVHKS RNVDVGDALI SQSPKDLKLL RDKVKAKREK AKKLLGERTR KKDLMDEDDL IERELEDVQL AVEDEKTKER KVQSRPKAEN SDLMGTEHGE
501: ILDVKGEVKN TEEGEMVNNN VSPMMHSRKR KMGSPPEKQS EGKRRHNSEN GEESHKTSRG SSHHGDREHR RHSQENNHS

Arabidopsis Description

Cyclin family protein [Source:UniProtKB/TrEMBL;Acc:F4KD43]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.