Factsheet for Solyc07g032480.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g056280.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27630.1	Solyc04g056280.2.1	AT5G10270.1	12678503
AT1G27630.1	Solyc04g056280.2.1	AT5G10270.1	20706207
AT1G27630.1	Solyc04g056280.2.1	AT5G64960.1	12678503
AT1G27630.1	Solyc04g056280.2.1	AT5G64960.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400044127	Potato	nucleus	94.19	91.75
VIT_18s0001g12980.t01	Wine grape	nucleus	46.97	43.89
Bra030056.1-P	Field mustard	cytosol	33.17	43.77
CDY03933	Canola	cytosol	33.17	43.77
CDY60279	Canola	cytosol	33.17	43.77
AT1G27630.1	Thale cress	cytosol	32.45	42.27
CDY11776	Canola	cytosol	32.45	41.88
Bra010927.1-P	Field mustard	nucleus	32.2	41.56
GSMUA_Achr3P20770_001	Banana	nucleus	41.89	41.39
CDX90099	Canola	nucleus	32.2	41.3
GSMUA_Achr8P18640_001	Banana	nucleus	38.74	38.65
Os02t0133000-00	Rice	extracellular	33.66	31.17
Solyc10g078180.1.1	Tomato	nucleus	40.44	26.89
Solyc09g075760.2.1	Tomato	nucleus	23.49	26.36
Os02t0438200-01	Rice	nucleus	40.19	26.35
Zm00001d017392_P009	Maize	cytosol	39.95	25.15
Zm00001d051291_P003	Maize	cytosol	40.68	24.96
EES07541	Sorghum	plastid	40.92	24.25
KXG29406	Sorghum	cytosol	32.45	24.23
Zm00001d015164_P001	Maize	cytosol	30.51	23.16
Solyc01g098350.2.1	Tomato	nucleus	22.52	21.83
Solyc06g083260.2.1	Tomato	cytosol, nucleus	12.35	20.4
TraesCS6A01G096600.1	Wheat	nucleus	32.2	18.87
TraesCS6B01G125000.1	Wheat	nucleus	32.69	17.9
TraesCS6D01G087700.1	Wheat	nucleus	32.2	15.91
HORVU6Hr1G017740.2	Barley	nucleus	28.81	13.09

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.9	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_N	GO:GO:0000307
GO:GO:0003674	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006464	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016538	GO:GO:0019538	GO:GO:0030234	GO:GO:0045737	GO:GO:0045944	GO:GO:1901409
UniProt:K4CDI9	PFAM:PF00134	PIRSF:PIRSF036580	PANTHER:PTHR10026	PANTHER:PTHR10026:SF77	SMART:SM00385
SUPFAM:SSF47954	EnsemblPlantsGene:Solyc07g032480.2	EnsemblPlants:Solyc07g032480.2.1	UniParc:UPI000276B214	SEG:seg	:

Description

No Description!

Coordinates

chr7:-:39484582..39489004

Molecular Weight (calculated)

47294.8 Da

IEP (calculated)

8.371

GRAVY (calculated)

-0.438

Length

413 amino acids

Sequence
(BLAST)

001: MHIQEKSVSY TQRWYFTTEE IEDHSPSRRD GIDYEKESHL RKLYCVFLQE LGIELKVPQV TIATAMMLCH RFYMRQSHAK NHWQIVATVS MFLAGKAEET
101: PRWLSDLVVV AYKLVYKWDP SAPLRIRQKD IYDKEKESVV AGERMLLVTV AFDLSIQHPY KALVAAMKRL EISNNEMVKV AWNFVNDWLR TTLCLQYKPH
201: YVAAGSMFLA AKFLKVKLPA KKGNPWWMQF DVAPKKLEEV IQKMLQLLEQ NQKQVTPSTS SKLTESKPVA EKATSSIAES CISSVSVVAQ ESRNIGLVKT
301: RGLSTSVTSK FIEKASCNSI NTVKEETEHW ETSECGSANS AVENGVCQPV KNEGGKEICH AVSVSDHNGK FDIDRIKERL KRRKLEQSSM KKSSMYDEID
401: SEGWIERELE NLE

Best Arabidopsis Sequence Match ( AT4G19600.1 )
(BLAST)

001: MAGVLAGDCS FGESGVSSYS RNSNEKQDEV ARWYFGRKEI EENSPSRLDS IDLKKETYLR KSYCTFLQDL GMRLKVPQVT IATAIIFCHR FFIRQSHARN
101: DRRTIATVCM FLAGKVEETP RPLKDVIVVS YEIIHKKDPT TAQKIKQKEV YEQQKELILN GEKIVLSTLG FDFNVYHPYK PLVEAIKKFK VAQNALAQVA
201: WNFVNDGLRT SLCLQFKPHH IAAGAIFLAA KFLKVKLPSD GEKVWWQEFD VTPRQLEDVS NQMLELYEQN RVPASQVSEV ESSVGGGSAH HVGSRPSARL
301: THEHSNSDNL GGSTKATQNR SNDNGSGEAG SVITEQKGER DTETKDSMHT ESHPAHKSRS GVEAPGEDKI EKAGAHFPED DKSRIVGTAD VTVSQSPKDI
401: KMFRDKVKAK LEAKKVQGEK TRKKDLVDED DLIERELEDV ELAVEDDKDI QNKSSMGTEH GEILDGNNLV VNTEEGEMID DVSSTMPSRK RKMESPCEKQ
501: LGEGKRRHDN SENVEEGQKT NPGGSSHSYG DREPRRHSQE R

Arabidopsis Description

CYCT1-4Cyclin-T1-4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GYM6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.