CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES15089

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27630.1	EES15089	AT5G10270.1	12678503
AT1G27630.1	EES15089	AT5G10270.1	20706207
AT1G27630.1	EES15089	AT5G64960.1	12678503
AT1G27630.1	EES15089	AT5G64960.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d051291_P003	Maize	cytosol	80.63	83.51
Os02t0438200-01	Rice	nucleus	54.95	60.79
GSMUA_Achr3P20770_001	Banana	nucleus	32.42	54.07
GSMUA_Achr8P18640_001	Banana	nucleus	28.12	47.34
Solyc07g032480.2.1	Tomato	nucleus	24.25	40.92
PGSC0003DMT400044127	Potato	nucleus	24.39	40.09
VIT_18s0001g12980.t01	Wine grape	nucleus	24.68	38.91
CDY60279	Canola	cytosol	17.36	38.66
Bra030056.1-P	Field mustard	cytosol	17.36	38.66
CDY03933	Canola	cytosol	17.22	38.34
AT1G27630.1	Thale cress	cytosol	16.93	37.22
Bra010927.1-P	Field mustard	nucleus	16.79	36.56
CDX90099	Canola	nucleus	16.79	36.34
CDY11776	Canola	cytosol	16.64	36.25
EER88086	Sorghum	nucleus	23.24	34.03
EES11326	Sorghum	nucleus	23.24	33.06
KXG29406	Sorghum	cytosol	24.68	31.1
OQU93178	Sorghum	nucleus	22.67	27.05
KXG23456	Sorghum	nucleus	21.95	26.02
EER97007	Sorghum	nucleus	9.04	24.51
KXG30252	Sorghum	nucleus	10.33	22.29
OQU86869	Sorghum	cytosol, nucleus, plastid	9.9	21.7

Protein Annotations

EnsemblPlants:EES07541	EnsemblPlantsGene:SORBI_3004G302600	Gene3D:1.10.472.10	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_N
ncoils:Coil	PANTHER:PTHR10026	PANTHER:PTHR10026:SF102	PFAM:PF00134	ProteinID:EES07541	ProteinID:EES07541.2
SEG:seg	SMART:SM00385	SUPFAM:SSF47954	unigene:Sbi.17682	UniParc:UPI0007F31E08	UniProt:C5XS50
MapMan:13.1.1.1.9	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:64113858..64125536

Molecular Weight (calculated)

77673.8 Da

IEP (calculated)

6.410

GRAVY (calculated)

-0.314

Length

697 amino acids

Sequence
(BLAST)

001: MHGPNLLPCG LASVLSRRSP VRSICFWWRR LGGRRRAQPS IFGTFAGDEH PPGCFAKLAT SRIQLIKVPS TLSGFRGGCR EPIQQGVSDI LMDGASNILE
101: KSSHECMQSW YFTREELEKF SPSRKDGITE NKESEIRHLY CSFIRDVGIR LKLPQMTLAT AVMLCHRFYL HQSLAKNGWQ TVATVCVFLA SKVEDTPCPL
201: DYVVRVAYET MYRRDTAAAQ RIRQKDVFEK QKALILIGER LLLTTIRFDF NIQHPYRPLF DAMQNLGINQ KEVKQVAWNF VNDWLKTTLC LQYKPQYIAA
301: GSLYLAAKLH NIKLPLHGAQ VWWHQFDVAP KPLEAVIHQM MELTAVKKLM PARPNPVKLK ETLCEAKLSL SNSPDSVLNQ SSLLISSSSP DIGEPDQVQV
401: DSCQYLISSH TGDCRVSGPD SSLLNTCANR NVSCKAHDEE SLDQALITKH DNGMMSSSNQ TSLDATIGTE GSAMKQDVSH CNDFNIRVND ESLNQVSRNQ
501: HGGVPLPDVV SLDAKVDKES SRCVEPLIAN SSCCTDSVNV DSLCPDQRLA VAASGPTDDA PSVLLAKVES DPLSAKLENI DVARIKGLLM KRKSRREIQE
601: QAIALDGLSE EAWIERELET GIVTKQEANC AAISDELSDE AWIERELESG IVVGPRNEQA ITFDGLSEND WIERELESGI IVEPAPAIKK RRLESRC

Best Arabidopsis Sequence Match ( AT1G27630.1 )
(BLAST)

001: MGEEHPRKRS RQHFEAEARN VSLFESPQCE TSKWYFSREE IERFSPSRKD GIDLVKESFL RSSYCTFLQR LGMKLHVSQV TISCAMVMCH RFYMRQSHAK
101: NDWQTIATSS LFLACKAEDE PCQLSSVVVA SYEIIYEWDP SASIRIHQTE CYHEFKEIIL SGESLLLSTS AFHLDIELPY KPLAAALNRL NAWPDLATAA
201: WNFVHDWIRT TLCLQYKPHV IATATVHLAA TFQNAKVGSR RDWWLEFGVT TKLLKEVIQE MCTLIEVDRR RNMPPPPPPP RRELSWAIPA AVKPVHMARA
301: YPFHSYPLQS YRQAGIW

Arabidopsis Description

CYCT1-3Cyclin-T1-3 [Source:UniProtKB/Swiss-Prot;Acc:Q8LBC0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.