CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G056640.2	Barley	plastid	18.58	70.59
Os01t0377500-01	Rice	nucleus	83.9	63.47
TraesCS6B01G362300.1	Wheat	nucleus	78.64	61.95
TraesCS6A01G331500.1	Wheat	nucleus	78.95	61.89
TraesCS6D01G310800.2	Wheat	nucleus	78.33	61.71
Zm00001d033021_P001	Maize	cytosol	32.51	57.38
HORVU6Hr1G080430.3	Barley	nucleus	75.85	54.93
GSMUA_Achr8P06830_001	Banana	nucleus	68.73	49.89
Zm00001d019681_P002	Maize	nucleus	32.2	48.83
Solyc01g098350.2.1	Tomato	nucleus	60.37	45.77
KRH33999	Soybean	nucleus	61.92	44.64
Bra012508.1-P	Field mustard	nucleus	56.97	44.55
PGSC0003DMT400009464	Potato	cytosol	33.13	44.4
CDY03883	Canola	nucleus	57.28	44.36
CDY51595	Canola	nucleus	56.66	44.31
PGSC0003DMT400057824	Potato	nucleus	60.99	43.97
AT2G26430.1	Thale cress	cytosol	56.35	43.75
KRG92800	Soybean	nucleus	59.75	43.57
Zm00001d033023_P001	Maize	cytosol	33.13	43.5
VIT_12s0028g00110.t01	Wine grape	nucleus	56.97	33.76
CDY27590	Canola	cytosol	39.32	20.42
Bra032800.1-P	Field mustard	cytosol	39.32	20.42
EES11326	Sorghum	nucleus	22.6	14.9
EER88086	Sorghum	nucleus	20.12	13.66
EER97007	Sorghum	nucleus	10.84	13.62
OQU93178	Sorghum	nucleus	21.67	11.99
OQU86869	Sorghum	cytosol, nucleus, plastid	11.76	11.95
KXG29406	Sorghum	cytosol	20.43	11.93
CDX84949	Canola	cytosol	12.38	11.4
KXG23456	Sorghum	nucleus	20.12	11.05
EES07541	Sorghum	plastid	22.29	10.33

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.8	UniProt:A0A194YPY5	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_N
GO:GO:0000079	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0006139
GO:GO:0006355	GO:GO:0006464	GO:GO:0006950	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009506	GO:GO:0009628	GO:GO:0009651	GO:GO:0009987	GO:GO:0019538
GO:GO:0019901	EnsemblPlants:KXG30252	ProteinID:KXG30252	ProteinID:KXG30252.1	PFAM:PF00134	PIRSF:PIRSF036580
PANTHER:PTHR10026	PANTHER:PTHR10026:SF100	SMART:SM00385	EnsemblPlantsGene:SORBI_3004G151700	SUPFAM:SSF47954	UniParc:UPI0007F20948
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:48027565..48034442

Molecular Weight (calculated)

37278.4 Da

IEP (calculated)

9.894

GRAVY (calculated)

-1.104

Length

323 amino acids

Sequence
(BLAST)

001: MIYTAIDTFY LTDEQLRDSP SRKDGIDEAT ETALRVYGCD LIQESGILLK LPQAVMATAQ VLFHRFYCKK SFVRFSAKRV AASCVWLAGK LEESPRRSKH
101: IIFVFHRMES RRHRVPLPED PPWWTVFDAD EAGIQEVCKV LAHLYSLPKA QYIPVYKDND SFTVRRISDP QASKESPASA VASDKGTPIP SSSSQEKDSV
201: TKTILNKVKE KSDDEGKPLP AELDGKENLV VNSKNEKSDS GVDRSRERER ERSRGRERDA RGRDSDRDSR GRDSDRERDR RRRSRERSSG HSDKEKSRRH
301: SSRDRVDYYS SHSSREKDRH RHH

Best Arabidopsis Sequence Match ( AT2G26430.1 )
(BLAST)

001: MIYTAIDNFY LSDEQLKASP SRKDGIDETT EISLRIYGCD LIQEGGILLK LPQAVMATGQ VLFQRFYCKK SLAKFDVKIV AASCVWLASK LEENPKKARQ
101: VIIVFHRMEC RRENLPLEHL DMYAKKFSEL KVELSRTERH ILKEMGFVCH VEHPHKFISN YLATLETPPE LRQEAWNLAN DSLRTTLCVR FRSEVVACGV
201: VYAAARRFQV PLPENPPWWK AFDADKSSID EVCRVLAHLY SLPKAQYISV CKDGKPFTFS SRSGNSQGQS ATKDLLPGAG EAVDTKCTAG SANNDLKDGM
301: VTTPHEKATD SKKSGTESNS QPIVGDSSYE RSKVGDRERE SDREKERGRE RDRGRSHRGR DSDRDSDRER DKLKDRSHHR SRDRLKDSGG HSDKSRHHSS
401: RDRDYRDSSK DRRRHH

Arabidopsis Description

CYCL1-1Cyclin-L1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWV3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.