Factsheet for GSMUA_Achr8P06830_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033021_P001	Maize	cytosol	35.51	86.34
PGSC0003DMT400009464	Potato	cytosol	41.35	76.35
HORVU6Hr1G056640.2	Barley	plastid	14.16	74.12
Os01t0377500-01	Rice	nucleus	70.34	73.3
Zm00001d019681_P002	Maize	nucleus	34.61	72.3
TraesCS6D01G310800.2	Wheat	nucleus	65.62	71.22
TraesCS6B01G362300.1	Wheat	nucleus	64.94	70.49
TraesCS6A01G331500.1	Wheat	nucleus	64.72	69.9
Solyc01g098350.2.1	Tomato	nucleus	65.84	68.78
KXG30252	Sorghum	nucleus	49.89	68.73
KRH33999	Soybean	nucleus	68.99	68.53
KRG92800	Soybean	nucleus	68.09	68.4
Bra012508.1-P	Field mustard	nucleus	61.8	66.59
CDY51595	Canola	nucleus	61.57	66.34
CDY03883	Canola	nucleus	62.02	66.19
AT2G26430.1	Thale cress	cytosol	61.8	66.11
PGSC0003DMT400057824	Potato	nucleus	65.62	65.18
HORVU6Hr1G080430.3	Barley	nucleus	62.7	62.56
Zm00001d019684_P002	Maize	mitochondrion	36.18	57.71
VIT_12s0028g00110.t01	Wine grape	nucleus	67.64	55.23
Zm00001d033023_P001	Maize	cytosol	22.47	40.65
CDY27590	Canola	cytosol	46.29	33.12
Bra032800.1-P	Field mustard	cytosol	46.07	32.96
GSMUA_Achr3P20770_001	Banana	nucleus	22.25	23.68
CDX84949	Canola	cytosol	17.75	22.51
GSMUA_Achr8P18640_001	Banana	nucleus	20.0	21.5
GSMUA_Achr6P30140_001	Banana	nucleus	22.7	19.92
GSMUA_Achr6P04070_001	Banana	nucleus	20.9	19.14
GSMUA_Achr6P31620_001	Banana	cytosol	22.02	19.1
GSMUA_Achr7P02730_001	Banana	cytosol	10.79	18.25
GSMUA_Achr8P00390_001	Banana	mitochondrion	13.71	17.94

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.8	ncoils:Coil	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_N
GO:GO:0005575	GO:GO:0006950	GO:GO:0008150	GO:GO:0009506	GO:GO:0009628	GO:GO:0009651
EnsemblPlantsGene:GSMUA_Achr8G06830_001	EnsemblPlants:GSMUA_Achr8P06830_001	EnsemblPlants:GSMUA_Achr8T06830_001	UniProt:M0TN86	PFAM:PF00134	PIRSF:PIRSF036580
PANTHER:PTHR10026	PANTHER:PTHR10026:SF100	SMART:SM00385	SUPFAM:SSF47954	UniParc:UPI000295F1C3	SEG:seg

Description

Cyclin-L1-1 [Source:GMGC_GENE;Acc:GSMUA_Achr8G06830_001]

Coordinates

chr8:+:4432292..4436437

Molecular Weight (calculated)

51267.0 Da

IEP (calculated)

8.726

GRAVY (calculated)

-0.956

Length

445 amino acids

Sequence
(BLAST)

001: MIYTAIDTFY LTDEQLKNSP SRKDGIDEET ETTLRIYGCD LIQESGILLK LPQAVMATGQ VLFHRFYCKK SFARFSVKRV AASCVWLASK LEECPKKAKH
101: VIIVFHRMEC RRESLPVELL DVLSKKYTEL KNDLVRTERH LLKEMGFICH VEHPHKFISN YLATLEAPPE LRQEAWNLAN DSLRTTLCVR FKSEVVACGV
201: VYAAARRFQV PLPENPPWWL VFDADKAGID EVCRVLAHLY SLPKAQYVPV YKDNDSFTSR NKNSDQQAQV QKVESSADGD TNGTSTLKLG APNSDASLSK
301: EAIVKAALDK LKVSKKTDDD TRTVAAEGDH KEESTVKPKI DHKADANTER NYDRERERTK TRDRDSRGRD SDYDGRGRDS DRDRDREKDV EREREKDRRH
401: RAKDKGSGHS EKSRHHSSRD RSDYHSSHSS RDKDRHERHR HHPYG

Best Arabidopsis Sequence Match ( AT2G26430.1 )
(BLAST)

001: MIYTAIDNFY LSDEQLKASP SRKDGIDETT EISLRIYGCD LIQEGGILLK LPQAVMATGQ VLFQRFYCKK SLAKFDVKIV AASCVWLASK LEENPKKARQ
101: VIIVFHRMEC RRENLPLEHL DMYAKKFSEL KVELSRTERH ILKEMGFVCH VEHPHKFISN YLATLETPPE LRQEAWNLAN DSLRTTLCVR FRSEVVACGV
201: VYAAARRFQV PLPENPPWWK AFDADKSSID EVCRVLAHLY SLPKAQYISV CKDGKPFTFS SRSGNSQGQS ATKDLLPGAG EAVDTKCTAG SANNDLKDGM
301: VTTPHEKATD SKKSGTESNS QPIVGDSSYE RSKVGDRERE SDREKERGRE RDRGRSHRGR DSDRDSDRER DKLKDRSHHR SRDRLKDSGG HSDKSRHHSS
401: RDRDYRDSSK DRRRHH

Arabidopsis Description

CYCL1-1Cyclin-L1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWV3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.