Factsheet for HORVU6Hr1G080430.3

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G331500.1	Wheat	nucleus	87.44	94.66
TraesCS6B01G362300.1	Wheat	nucleus	86.77	94.39
Zm00001d033021_P001	Maize	cytosol	38.56	93.99
TraesCS6D01G310800.2	Wheat	nucleus	86.32	93.9
HORVU6Hr1G056640.2	Barley	plastid	17.26	90.59
Zm00001d019681_P002	Maize	nucleus	38.12	79.81
Os01t0377500-01	Rice	nucleus	74.89	78.22
KXG30252	Sorghum	nucleus	54.93	75.85
PGSC0003DMT400009464	Potato	cytosol	38.34	70.95
GSMUA_Achr8P06830_001	Banana	nucleus	62.56	62.7
Solyc01g098350.2.1	Tomato	nucleus	58.52	61.27
Bra012508.1-P	Field mustard	nucleus	54.48	58.84
CDY51595	Canola	nucleus	54.48	58.84
CDY03883	Canola	nucleus	54.93	58.75
PGSC0003DMT400057824	Potato	nucleus	58.52	58.26
KRH33999	Soybean	nucleus	57.62	57.37
KRG92800	Soybean	nucleus	56.73	57.11
AT2G26430.1	Thale cress	cytosol	53.14	56.97
VIT_12s0028g00110.t01	Wine grape	nucleus	58.3	47.71
Zm00001d033023_P001	Maize	cytosol	26.01	47.15
Bra032800.1-P	Field mustard	cytosol	41.03	29.42
CDY27590	Canola	cytosol	41.03	29.42
HORVU4Hr1G021250.6	Barley	nucleus	21.97	20.46
HORVU2Hr1G083340.2	Barley	nucleus	21.52	19.75
CDX84949	Canola	cytosol	15.47	19.66
HORVU3Hr1G059980.2	Barley	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	15.7	18.23
HORVU0Hr1G007890.2	Barley	cytosol, nucleus	15.47	18.11
HORVU6Hr1G083890.3	Barley	plastid	12.11	17.82
HORVU5Hr1G038970.16	Barley	nucleus	21.52	17.61
HORVU4Hr1G021220.13	Barley	cytosol	17.26	17.5
HORVU6Hr1G017740.2	Barley	nucleus	19.51	9.57

Protein Annotations

EnsemblPlants:HORVU6Hr1G080430.3	EnsemblPlantsGene:HORVU6Hr1G080430	Gene3D:1.10.472.10	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_N
PANTHER:PTHR10026	PANTHER:PTHR10026:SF100	PFAM:PF00134	PIRSF:PIRSF036580	SEG:seg	SMART:SM00385
SUPFAM:SSF47954	UniParc:UPI000B475618	UniProt:A0A287UVU8	MapMan:13.1.1.1.8	:	:

Description

No Description!

Coordinates

chrchr6H:+:541690215..541693415

Molecular Weight (calculated)

50738.1 Da

IEP (calculated)

8.952

GRAVY (calculated)

-0.635

Length

446 amino acids

Sequence
(BLAST)

001: MIYTAIDTFY LTDEQLRDSP SRKDGIDEAA ETTLRVYGCD LIQESGILLR LPQAVMATAQ VLFHRFYCKK SFARFSAKRV AASCVWLAGK LEESPRRSKH
101: IIFVFHRMEC RRENLPIEFL DVFSTKYTEL RHDLIRTERH LLKEMGFICH VEHPHKFISN YLATLEAPEL TQEAWNLAND SLRTTLCVRF KSEVVACGVV
201: YAAARRHRVP LPEEPPWWTV FDADEAAIQE VCRILAHLYS LPKAQYIPVY KDNDSFSVRR ALDTHASKES PASAVASDRG TPVPSSSSQE KNSLTKARRE
301: KVKENSDTKD KPLPAELNGK GGQAANSKIE RPEPNVDRAE ERERSRSRGR DRDIRGRDSD HERERDRAKR HRSRDKSSGY SDKEKSRHRS SRGTYICSAN
401: LTSPIPYCNP LNCFVSHLSS LLPLQTVPAT THLETKIIGT GAIDPA

Best Arabidopsis Sequence Match ( AT2G26430.1 )
(BLAST)

001: MIYTAIDNFY LSDEQLKASP SRKDGIDETT EISLRIYGCD LIQEGGILLK LPQAVMATGQ VLFQRFYCKK SLAKFDVKIV AASCVWLASK LEENPKKARQ
101: VIIVFHRMEC RRENLPLEHL DMYAKKFSEL KVELSRTERH ILKEMGFVCH VEHPHKFISN YLATLETPPE LRQEAWNLAN DSLRTTLCVR FRSEVVACGV
201: VYAAARRFQV PLPENPPWWK AFDADKSSID EVCRVLAHLY SLPKAQYISV CKDGKPFTFS SRSGNSQGQS ATKDLLPGAG EAVDTKCTAG SANNDLKDGM
301: VTTPHEKATD SKKSGTESNS QPIVGDSSYE RSKVGDRERE SDREKERGRE RDRGRSHRGR DSDRDSDRER DKLKDRSHHR SRDRLKDSGG HSDKSRHHSS
401: RDRDYRDSSK DRRRHH

Arabidopsis Description

CYCL1-1Cyclin-L1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWV3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.