Factsheet for Solyc01g098350.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400057824	Potato	nucleus	96.71	91.96
Zm00001d033021_P001	Maize	cytosol	35.45	82.51
HORVU6Hr1G056640.2	Barley	plastid	14.32	71.76
KRG92800	Soybean	nucleus	73.47	70.65
KRH33999	Soybean	nucleus	73.71	70.09
Zm00001d019681_P002	Maize	nucleus	34.98	69.95
Bra012508.1-P	Field mustard	nucleus	66.2	68.28
CDY51595	Canola	nucleus	65.96	68.04
CDY03883	Canola	nucleus	65.96	67.39
AT2G26430.1	Thale cress	cytosol	65.49	67.07
TraesCS6D01G310800.2	Wheat	nucleus	63.62	66.1
TraesCS6B01G362300.1	Wheat	nucleus	63.62	66.1
GSMUA_Achr8P06830_001	Banana	nucleus	68.78	65.84
TraesCS6A01G331500.1	Wheat	nucleus	63.62	65.78
Os01t0377500-01	Rice	nucleus	65.49	65.34
KXG30252	Sorghum	nucleus	45.77	60.37
HORVU6Hr1G080430.3	Barley	nucleus	61.27	58.52
VIT_12s0028g00110.t01	Wine grape	nucleus	72.3	56.51
Zm00001d019684_P002	Maize	mitochondrion	34.51	52.69
Zm00001d033023_P001	Maize	cytosol	22.54	39.02
CDY27590	Canola	cytosol	47.89	32.8
Bra032800.1-P	Field mustard	cytosol	47.65	32.64
CDX84949	Canola	cytosol	19.72	23.93
Solyc07g032480.2.1	Tomato	nucleus	21.83	22.52
Solyc06g083260.2.1	Tomato	cytosol, nucleus	11.97	20.4
Solyc09g075760.2.1	Tomato	nucleus	16.2	18.75
Solyc10g078180.1.1	Tomato	nucleus	23.94	16.43

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.8	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_N	GO:GO:0000307
GO:GO:0003674	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006464	GO:GO:0006950	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009506	GO:GO:0009628	GO:GO:0009651	GO:GO:0009987	GO:GO:0016538	GO:GO:0019538
GO:GO:0030234	GO:GO:0045737	GO:GO:0045944	GO:GO:1901409	UniProt:K4B0M2	PFAM:PF00134
PIRSF:PIRSF036580	PANTHER:PTHR10026	PANTHER:PTHR10026:SF100	SMART:SM00385	SUPFAM:SSF47954	EnsemblPlantsGene:Solyc01g098350.2
EnsemblPlants:Solyc01g098350.2.1	UniParc:UPI00027685DB	SEG:seg	:	:	:

Description

Cyclin-L1-1 [Source:Projected from Arabidopsis thaliana (AT2G26430) UniProtKB/Swiss-Prot;Acc:Q8RWV3]

Coordinates

chr1:-:88892854..88896872

Molecular Weight (calculated)

49375.1 Da

IEP (calculated)

8.531

GRAVY (calculated)

-0.986

Length

426 amino acids

Sequence
(BLAST)

001: MIYTAIDTFY LAEEQLVESP SRKDGIDDVT ETALRIYGCD LVQECGILLR LPQAVMATGQ VLFHRFYCKK SFARFNVKRV AASCVWLASK LEESPRKARQ
101: VLVVFHRMEC RRENLPIEHL DTSSKKYVDL KADLIRTERH LLKEMGFICH VEHPHKFISN YLATLETPAE LRQEAWNLAN DSLRTTLCVR FKSEVVACGV
201: VYAAARRFQV PLPENPPWWK AFDADKAGID EVCRVLAHLY SLPKAKYIPV CKEGGSFATS NRSRDSPSLP VSKEGLLDAP PVNEDTEEVA KEADTKAVLD
301: KLKDSKKSDD DSKNMPSEGE SKEEPGRTDH RIDAGGEKNK DREKDRGRDR ERERDKERLK SRERDRGRES DRERDRDDFE RDREKSKERS HRSRDKGHSE
401: KPKHQSSRDR DYLSYSSREK DRRRHH

Best Arabidopsis Sequence Match ( AT2G26430.1 )
(BLAST)

001: MIYTAIDNFY LSDEQLKASP SRKDGIDETT EISLRIYGCD LIQEGGILLK LPQAVMATGQ VLFQRFYCKK SLAKFDVKIV AASCVWLASK LEENPKKARQ
101: VIIVFHRMEC RRENLPLEHL DMYAKKFSEL KVELSRTERH ILKEMGFVCH VEHPHKFISN YLATLETPPE LRQEAWNLAN DSLRTTLCVR FRSEVVACGV
201: VYAAARRFQV PLPENPPWWK AFDADKSSID EVCRVLAHLY SLPKAQYISV CKDGKPFTFS SRSGNSQGQS ATKDLLPGAG EAVDTKCTAG SANNDLKDGM
301: VTTPHEKATD SKKSGTESNS QPIVGDSSYE RSKVGDRERE SDREKERGRE RDRGRSHRGR DSDRDSDRER DKLKDRSHHR SRDRLKDSGG HSDKSRHHSS
401: RDRDYRDSSK DRRRHH

Arabidopsis Description

CYCL1-1Cyclin-L1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWV3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.