Factsheet for Bra012508.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51595	Canola	nucleus	99.76	99.76
CDY03883	Canola	nucleus	96.85	95.92
AT2G26430.1	Thale cress	cytosol	87.89	87.26
Zm00001d033021_P001	Maize	cytosol	35.84	80.87
PGSC0003DMT400009464	Potato	cytosol	43.58	74.69
Zm00001d019681_P002	Maize	nucleus	34.87	67.61
KRG92800	Soybean	nucleus	72.4	67.49
KRH33999	Soybean	nucleus	73.12	67.41
HORVU6Hr1G056640.2	Barley	plastid	13.8	67.06
Solyc01g098350.2.1	Tomato	nucleus	68.28	66.2
PGSC0003DMT400057824	Potato	nucleus	68.77	63.39
GSMUA_Achr8P06830_001	Banana	nucleus	66.59	61.8
TraesCS6B01G362300.1	Wheat	nucleus	61.02	61.46
TraesCS6D01G310800.2	Wheat	nucleus	60.77	61.22
TraesCS6A01G331500.1	Wheat	nucleus	61.02	61.16
Os01t0377500-01	Rice	nucleus	63.2	61.12
KXG30252	Sorghum	nucleus	44.55	56.97
HORVU6Hr1G080430.3	Barley	nucleus	58.84	54.48
VIT_12s0028g00110.t01	Wine grape	nucleus	69.49	52.66
Zm00001d019684_P002	Maize	mitochondrion	32.93	48.75
Bra032800.1-P	Field mustard	cytosol	60.05	39.87
Zm00001d033023_P001	Maize	cytosol	23.0	38.62
Bra006723.1-P	Field mustard	nucleus	17.92	28.03
Bra030056.1-P	Field mustard	cytosol	17.92	23.64
Bra010927.1-P	Field mustard	nucleus	17.43	22.5
Bra031514.1-P	Field mustard	cytosol	16.95	22.15
Bra037473.1-P	Field mustard	mitochondrion	10.65	21.05
Bra013402.1-P	Field mustard	nucleus	18.64	19.01
Bra020954.1-P	Field mustard	nucleus	23.73	18.6
Bra020685.1-P	Field mustard	cytosol	8.72	18.46
Bra021950.1-P	Field mustard	nucleus	24.7	18.25
Bra020686.1-P	Field mustard	cytosol	11.14	18.18
Bra025087.1-P	Field mustard	nucleus	24.7	17.99

Protein Annotations

EnsemblPlants:Bra012508.1	EnsemblPlants:Bra012508.1-P	EnsemblPlantsGene:Bra012508	Gene3D:1.10.472.10	InterPro:Cyclin-like	InterPro:Cyclin-like_sf
InterPro:Cyclin_N	PANTHER:PTHR10026	PANTHER:PTHR10026:SF100	PFAM:PF00134	PIRSF:PIRSF036580	SEG:seg
SMART:SM00385	SUPFAM:SSF47954	UniParc:UPI000254122F	UniProt:M4D7P8	MapMan:13.1.1.1.8	:

Description

AT2G26430 (E=5e-169) RCY1, ATRCY1 | RCY1 (ARGININE-RICH CYCLIN 1); cyclin-dependent protein kinase regulator

Coordinates

chrA07:-:7117248..7119257

Molecular Weight (calculated)

47530.9 Da

IEP (calculated)

9.197

GRAVY (calculated)

-0.883

Length

413 amino acids

Sequence
(BLAST)

001: MIYTAIDNFY LPEEQIKNSP SRKDGIDEAT ETTLRIYGCD LIQEAGILLR LPQAVMATGQ VLFHRFYCKK SLAKFDVKIV AASCVWLASK LEENPKKARQ
101: VIIVFHRMEC RRENLPLDHL DLFSKKYSEL KVELSRTERH ILKEMGFVCH VEHPHKFISN YLATLETPPE LRQEAWNLAN DSLRTTLCVR FRSEVVACGV
201: VYAAARRFQV PLPENPPWWK AFDADKSGID EVCRVLAHLY SLPKAQYISV CKDGKPFTFS SRSANSQSQS ATKDFSPAVG DAVDTKCPSG SESKDGKITT
301: PHEMATDAKK SDTESNSLPI VGDSREERRK VGESDREKER GRERDRVSRS HRDRGRDSDK ESDRERDKLK ERSHHRSRDR LKDSGDRSRH HSSRDRDYRE
401: SSHSSKDRRS RHH

Best Arabidopsis Sequence Match ( AT2G26430.1 )
(BLAST)

001: MIYTAIDNFY LSDEQLKASP SRKDGIDETT EISLRIYGCD LIQEGGILLK LPQAVMATGQ VLFQRFYCKK SLAKFDVKIV AASCVWLASK LEENPKKARQ
101: VIIVFHRMEC RRENLPLEHL DMYAKKFSEL KVELSRTERH ILKEMGFVCH VEHPHKFISN YLATLETPPE LRQEAWNLAN DSLRTTLCVR FRSEVVACGV
201: VYAAARRFQV PLPENPPWWK AFDADKSSID EVCRVLAHLY SLPKAQYISV CKDGKPFTFS SRSGNSQGQS ATKDLLPGAG EAVDTKCTAG SANNDLKDGM
301: VTTPHEKATD SKKSGTESNS QPIVGDSSYE RSKVGDRERE SDREKERGRE RDRGRSHRGR DSDRDSDRER DKLKDRSHHR SRDRLKDSGG HSDKSRHHSS
401: RDRDYRDSSK DRRRHH

Arabidopsis Description

CYCL1-1Cyclin-L1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWV3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.