Factsheet for PGSC0003DMT400009464

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033021_P001	Maize	cytosol	52.7	69.4
Zm00001d019681_P002	Maize	nucleus	51.87	58.69
HORVU6Hr1G056640.2	Barley	plastid	19.92	56.47
Bra012508.1-P	Field mustard	nucleus	74.69	43.58
CDY51595	Canola	nucleus	74.69	43.58
CDY03883	Canola	nucleus	74.69	43.17
AT2G26430.1	Thale cress	cytosol	73.03	42.31
KRG92800	Soybean	nucleus	77.18	41.99
TraesCS6B01G362300.1	Wheat	nucleus	71.37	41.95
TraesCS6A01G331500.1	Wheat	nucleus	71.37	41.75
TraesCS6D01G310800.2	Wheat	nucleus	70.95	41.71
KRH33999	Soybean	nucleus	77.18	41.52
PGSC0003DMT400057824	Potato	nucleus	77.18	41.52
GSMUA_Achr8P06830_001	Banana	nucleus	76.35	41.35
Os01t0377500-01	Rice	nucleus	72.61	40.98
HORVU6Hr1G080430.3	Barley	nucleus	70.95	38.34
VIT_12s0028g00110.t01	Wine grape	nucleus	75.1	33.21
KXG30252	Sorghum	nucleus	44.4	33.13
CDY27590	Canola	cytosol	60.17	23.31
Bra032800.1-P	Field mustard	cytosol	59.75	23.15
Zm00001d019684_P002	Maize	mitochondrion	25.73	22.22
Zm00001d033023_P001	Maize	cytosol	21.99	21.54
PGSC0003DMT400044127	Potato	nucleus	34.85	19.81
PGSC0003DMT400051796	Potato	cytosol	17.43	16.8
PGSC0003DMT400081343	Potato	nucleus	27.8	16.75
CDX84949	Canola	cytosol	23.24	15.95

Protein Annotations

EnsemblPlants:PGSC0003DMT400009464	EnsemblPlantsGene:PGSC0003DMG400003689	EntrezGene:102598115	Gene3D:1.10.472.10	InterPro:Cyclin-like	InterPro:Cyclin-like_sf
InterPro:Cyclin_N	PANTHER:PTHR10026	PANTHER:PTHR10026:SF100	PFAM:PF00134	PGSC:PGSC0003DMG400003689	PIRSF:PIRSF036580
RefSeq:XP_006342221.1	SMART:SM00385	SUPFAM:SSF47954	UniParc:UPI000294A309	UniProt:M0ZWA6	MapMan:13.1.1.1.8

Description

Cyclin-L2 [Source:PGSC_GENE;Acc:PGSC0003DMG400003689]

Coordinates

chr4:+:69903412..69904198

Molecular Weight (calculated)

27970.1 Da

IEP (calculated)

6.970

GRAVY (calculated)

0.037

Length

241 amino acids

Sequence
(BLAST)

001: MIYTAIDTFY VTEEELINSP SRKDGIDELT ETALRIHGCN LIQESGILLR LPQSVMATGQ VLFHRFYCKK SFANFNNVKI VSATCIWLAS KLEEIPRKTI
101: HVCNVFRRME CKRENSVEWN YIDLKTELII ETEIHVLREI GFICHVEHPH KFVSIYIAIL EITCPELKQE AWNLANDSLR TTLCVRFKSE IVACGVIYAA
201: ARRFQVPLPE NPPWWIAFDA VKDGIDEVCR VLAHLYHKFR I

Best Arabidopsis Sequence Match ( AT2G26430.1 )
(BLAST)

001: MIYTAIDNFY LSDEQLKASP SRKDGIDETT EISLRIYGCD LIQEGGILLK LPQAVMATGQ VLFQRFYCKK SLAKFDVKIV AASCVWLASK LEENPKKARQ
101: VIIVFHRMEC RRENLPLEHL DMYAKKFSEL KVELSRTERH ILKEMGFVCH VEHPHKFISN YLATLETPPE LRQEAWNLAN DSLRTTLCVR FRSEVVACGV
201: VYAAARRFQV PLPENPPWWK AFDADKSSID EVCRVLAHLY SLPKAQYISV CKDGKPFTFS SRSGNSQGQS ATKDLLPGAG EAVDTKCTAG SANNDLKDGM
301: VTTPHEKATD SKKSGTESNS QPIVGDSSYE RSKVGDRERE SDREKERGRE RDRGRSHRGR DSDRDSDRER DKLKDRSHHR SRDRLKDSGG HSDKSRHHSS
401: RDRDYRDSSK DRRRHH

Arabidopsis Description

CYCL1-1Cyclin-L1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWV3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.