Factsheet for PGSC0003DMT400051796

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g083260.2.1	Tomato	cytosol, nucleus	100.0	100.0
KRH46635	Soybean	cytosol	81.6	80.63
KRG99632	Soybean	cytosol	80.8	79.84
VIT_00s0360g00050.t01	Wine grape	cytosol	79.6	79.28
AT5G48640.1	Thale cress	cytosol	74.8	73.91
CDX86291	Canola	cytosol	73.2	72.62
Bra020686.1-P	Field mustard	cytosol	73.2	72.33
CDY51053	Canola	cytosol	73.2	72.33
CDY66082	Canola	cytosol	72.4	71.83
CDY51052	Canola	cytosol	72.0	71.71
CDY69301	Canola	cytosol	72.4	71.54
CDX85352	Canola	cytosol	72.0	71.43
AT5G48630.2	Thale cress	cytosol, nucleus, plastid	72.8	71.09
Os09t0504400-01	Rice	nucleus	72.8	70.82
TraesCS6D01G332100.1	Wheat	peroxisome	72.4	70.43
Bra037473.1-P	Field mustard	mitochondrion	58.8	70.33
TraesCS6B01G382700.1	Wheat	peroxisome	72.0	70.04
TraesCS6A01G349600.1	Wheat	peroxisome	72.0	70.04
GSMUA_Achr7P02730_001	Banana	cytosol	73.6	69.96
EER97007	Sorghum	nucleus	71.6	69.65
TraesCS5B01G281600.1	Wheat	peroxisome	71.6	69.38
TraesCS5D01G289300.2	Wheat	peroxisome	71.6	69.38
Bra020685.1-P	Field mustard	cytosol	53.6	68.72
TraesCS5A01G282200.1	Wheat	peroxisome	70.8	68.6
TraesCS5A01G057600.1	Wheat	mitochondrion	53.6	66.67
HORVU6Hr1G083890.3	Barley	plastid	72.8	60.07
Zm00001d021031_P002	Maize	endoplasmic reticulum, vacuole	72.0	57.14
CDY05665	Canola	endoplasmic reticulum, extracellular	23.6	54.13
PGSC0003DMT400009464	Potato	cytosol	16.8	17.43
PGSC0003DMT400081343	Potato	nucleus	20.8	13.0
PGSC0003DMT400044127	Potato	nucleus	20.8	12.26
PGSC0003DMT400057824	Potato	nucleus	20.0	11.16

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:102592474	MapMan:13.1.1.1.3	MapMan:15.3.3.4.4	InterPro:Cyclin-like	InterPro:Cyclin-like_sf
InterPro:CyclinC/Ssn8	InterPro:Cyclin_N	GO:GO:0003674	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005654	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016538	GO:GO:0016592	GO:GO:0019538	GO:GO:0030234	GO:GO:0045859	UniProt:M1BS81
PFAM:PF00134	EnsemblPlantsGene:PGSC0003DMG401020104	PGSC:PGSC0003DMG401020104	EnsemblPlants:PGSC0003DMT400051796	PIRSF:PIRSF028758	PANTHER:PTHR10026
PANTHER:PTHR10026:SF7	SMART:SM00385	SUPFAM:SSF47954	UniParc:UPI0002765DD4	RefSeq:XP_006352673.1	SEG:seg

Description

Cyclin-C1-2 [Source:PGSC_GENE;Acc:PGSC0003DMG401020104]

Coordinates

chr6:-:58224782..58232366

Molecular Weight (calculated)

29258.6 Da

IEP (calculated)

6.798

GRAVY (calculated)

-0.164

Length

250 amino acids

Sequence
(BLAST)

001: MAANFWISSQ YKELLDQEEV DVVHQLDKER GITLDDFKLI KLHMSNYVAR LAQNVKVRQR VVATAITYMR RVYVRRSMTE YDPRLVAPTC LYLASKAEES
101: TVQARLLVFY IKKLYSDEKY KYEIKDILDM EMKVLEALNY YLVVYHPYRS LAQFLQDAGM NDATQLTWGL INDTYKMDLI LIHPPHLITL ACIYIASVLK
201: DKETTAWFEE LRVDMNVVKN IAMEILDYYD GHRSISDERV NAAMSKLAGR

Best Arabidopsis Sequence Match ( AT5G48630.1 )
(BLAST)

001: MASNFWTSTH YKELKDPEEV NVVHPLDAQR GISVEDFRLI KLHMSNYISK LAQHIKIRQR VVATAVTYMR RVYTRKSLTE YEPRLVAPTC LYLACKAEES
101: VVHAKLLVFY MKKLYADEKF RYEIKDILEM EMKVLEALNF YLVVFHPYRS LPEFLQDSGI NDTSMTHLTW GLVNDTYRMD LILIHPPFLI TLACIYIASV
201: HKEKDIKTWF EELSVDMNIV KNIAMEILDF YENHRLFTEE RVHAAFNKLA TNP

Arabidopsis Description

Cyclin family protein [Source:UniProtKB/TrEMBL;Acc:F4K359]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.