Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra037473.1-P | Field mustard | mitochondrion | 82.94 | 100.0 |
| CDX85352 | Canola | cytosol | 97.62 | 97.62 |
| AT5G48640.1 | Thale cress | cytosol | 91.67 | 91.3 |
| CDY66082 | Canola | cytosol | 87.7 | 87.7 |
| CDY51052 | Canola | cytosol | 87.3 | 87.65 |
| KRG99632 | Soybean | cytosol | 75.79 | 75.49 |
| KRH46635 | Soybean | cytosol | 75.0 | 74.7 |
| Solyc06g083260.2.1 | Tomato | cytosol, nucleus | 72.62 | 73.2 |
| PGSC0003DMT400051796 | Potato | cytosol | 72.62 | 73.2 |
| VIT_00s0360g00050.t01 | Wine grape | cytosol | 71.03 | 71.31 |
| CDY51053 | Canola | cytosol | 70.24 | 69.96 |
| CDY69301 | Canola | cytosol | 69.44 | 69.17 |
| TraesCS5D01G289300.2 | Wheat | peroxisome | 67.86 | 66.28 |
| TraesCS5B01G281600.1 | Wheat | peroxisome | 67.86 | 66.28 |
| TraesCS5A01G282200.1 | Wheat | peroxisome | 67.06 | 65.5 |
| Os09t0504400-01 | Rice | nucleus | 66.27 | 64.98 |
| EER97007 | Sorghum | nucleus | 66.27 | 64.98 |
| TraesCS6D01G332100.1 | Wheat | peroxisome | 65.48 | 64.2 |
| GSMUA_Achr7P02730_001 | Banana | cytosol | 66.67 | 63.88 |
| TraesCS6B01G382700.1 | Wheat | peroxisome | 65.08 | 63.81 |
| TraesCS6A01G349600.1 | Wheat | peroxisome | 65.08 | 63.81 |
| TraesCS5A01G057600.1 | Wheat | mitochondrion | 47.62 | 59.7 |
| HORVU6Hr1G083890.3 | Barley | plastid | 65.87 | 54.79 |
| Zm00001d021031_P002 | Maize | endoplasmic reticulum, vacuole | 66.67 | 53.33 |
| CDY05665 | Canola | endoplasmic reticulum, extracellular | 21.43 | 49.54 |
| CDX71123 | Canola | nucleus | 21.43 | 20.45 |
| CDX88692 | Canola | nucleus | 20.63 | 19.7 |
| CDY03933 | Canola | cytosol | 21.83 | 17.57 |
| CDY60279 | Canola | cytosol | 21.83 | 17.57 |
| CDX90099 | Canola | nucleus | 22.22 | 17.39 |
| CDY11776 | Canola | cytosol | 21.83 | 17.19 |
| CDY24526 | Canola | cytosol, nucleus, peroxisome | 19.05 | 15.19 |
| CDX78940 | Canola | nucleus | 23.41 | 14.57 |
| CDY54138 | Canola | cytosol | 18.25 | 14.56 |
| CDX99363 | Canola | nucleus | 23.02 | 14.39 |
| CDY26395 | Canola | nucleus | 25.79 | 12.36 |
| CDY51595 | Canola | nucleus | 19.44 | 11.86 |
| CDY03883 | Canola | nucleus | 19.44 | 11.75 |
| CDY65933 | Canola | nucleus | 25.79 | 11.44 |
| CDX76472 | Canola | nucleus | 23.81 | 11.34 |
| CDY09329 | Canola | nucleus | 23.81 | 11.3 |
| CDX82583 | Canola | nucleus | 25.4 | 11.29 |
| CDY39416 | Canola | nucleus | 25.4 | 11.05 |
| CDX99359 | Canola | nucleus | 23.02 | 10.86 |
| CDY27590 | Canola | cytosol | 15.87 | 6.43 |
| CDX84949 | Canola | cytosol | 5.16 | 3.7 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.3 | MapMan:15.3.3.4.4 | EnsemblPlants:CDX86291 | ProteinID:CDX86291 | ProteinID:CDX86291.1 |
| InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:CyclinC/Ssn8 | InterPro:Cyclin_N | GO:GO:0003674 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0016538 | GO:GO:0016592 |
| GO:GO:0030234 | EnsemblPlantsGene:GSBRNA2T00144403001 | PFAM:PF00134 | PIRSF:PIRSF028758 | PANTHER:PTHR10026 | PANTHER:PTHR10026:SF7 |
| SMART:SM00385 | SUPFAM:SSF47954 | UniParc:UPI0004EEE877 | : | : | : |
Description
BnaA06g30080D
Coordinates
chrLK031845:+:788790..790810
Molecular Weight (calculated)
29696.1 Da
IEP (calculated)
6.051
GRAVY (calculated)
-0.158
Length
252 amino acids
Sequence
(BLAST)
(BLAST)
001: MAANFWESSQ YKQLLDQEEV DVVQPLDKER GITIEDFKLI KFHMSNHIMK LAQHIKVRQR VVATAITYMR RVYTRKSMVE FEPRLVAIAC LYLASKAEES
101: IVQARNLVFY SKRLYPDEYK YELKDILGME MRVLEALDYY LVVFHPYRSL SEFLQDAALN DVNMNQFTWG IVNDTYKMDL ILVHPPYRIA LACIYIASVQ
201: REKDITAWLQ DLNDDMNLVK NIAMEILDFY ENYRTITDEK VSSAFSKLAL KP
101: IVQARNLVFY SKRLYPDEYK YELKDILGME MRVLEALDYY LVVFHPYRSL SEFLQDAALN DVNMNQFTWG IVNDTYKMDL ILVHPPYRIA LACIYIASVQ
201: REKDITAWLQ DLNDDMNLVK NIAMEILDFY ENYRTITDEK VSSAFSKLAL KP
001: MAANFWNSSH YKQLLDPEEV DVVHDLDKER GISIDDFKLI KFHMSNHIMK LAQHIKVRQR VVATAITYMR RVYIRKSMVE FEPRLVALTC LYLASKAEES
101: IVQARNLVFY IKRLYPDEYN KYELKDILGM EMKVLEALDY YLVVFHPYRS LSEFLQDAAL NDVNMNQITW GIVNDTYKMD LILVHPPYRI ALACIYIASV
201: HREKDITAWF EDLHEDMNLV KNIAMEILDF YENYRTITEE KVNSAFSKLA LKL
101: IVQARNLVFY IKRLYPDEYN KYELKDILGM EMKVLEALDY YLVVFHPYRS LSEFLQDAAL NDVNMNQITW GIVNDTYKMD LILVHPPYRI ALACIYIASV
201: HREKDITAWF EDLHEDMNLV KNIAMEILDF YENYRTITEE KVNSAFSKLA LKL
Arabidopsis Description
CYCC1-1Cyclin-C1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJK6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.