CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032800.1-P	Field mustard	cytosol	99.84	99.84
CDX84949	Canola	cytosol	34.41	60.97
CDY51595	Canola	nucleus	40.03	60.29
PGSC0003DMT400009464	Potato	cytosol	23.31	60.17
AT2G26430.1	Thale cress	cytosol	39.55	59.13
CDY03883	Canola	nucleus	39.39	58.75
Zm00001d033021_P001	Maize	cytosol	17.2	58.47
Zm00001d019681_P002	Maize	nucleus	16.72	48.83
KRG92800	Soybean	nucleus	34.41	48.31
KRH33999	Soybean	nucleus	34.73	48.21
Solyc01g098350.2.1	Tomato	nucleus	32.8	47.89
GSMUA_Achr8P06830_001	Banana	nucleus	33.12	46.29
PGSC0003DMT400057824	Potato	nucleus	33.12	45.98
TraesCS6D01G310800.2	Wheat	nucleus	30.06	45.61
TraesCS6A01G331500.1	Wheat	nucleus	29.9	45.15
TraesCS6B01G362300.1	Wheat	nucleus	29.74	45.12
Os01t0377500-01	Rice	nucleus	30.55	44.5
HORVU6Hr1G080430.3	Barley	nucleus	29.42	41.03
KXG30252	Sorghum	nucleus	20.42	39.32
VIT_12s0028g00110.t01	Wine grape	nucleus	33.28	37.98
Zm00001d019684_P002	Maize	mitochondrion	16.56	36.92
Zm00001d033023_P001	Maize	cytosol	13.67	34.55
HORVU6Hr1G056640.2	Barley	plastid	3.54	25.88
CDX71123	Canola	nucleus	9.32	21.97
CDX88692	Canola	nucleus	9.16	21.59
CDY60279	Canola	cytosol	9.97	19.81
CDY03933	Canola	cytosol	9.97	19.81
CDX90099	Canola	nucleus	10.13	19.57
CDY11776	Canola	cytosol	9.97	19.38
CDY54138	Canola	cytosol	9.0	17.72
CDY24526	Canola	cytosol, nucleus, peroxisome	8.84	17.41
CDX78940	Canola	nucleus	10.45	16.05
CDX86291	Canola	cytosol	6.43	15.87
CDX85352	Canola	cytosol	6.43	15.87
CDY51052	Canola	cytosol	6.27	15.54
CDY66082	Canola	cytosol	6.27	15.48
CDY51053	Canola	cytosol	6.27	15.41
CDY69301	Canola	cytosol	6.27	15.41
CDX99363	Canola	nucleus	9.81	15.14
CDY05665	Canola	endoplasmic reticulum, extracellular	2.57	14.68
CDX76472	Canola	nucleus	12.22	14.37
CDY09329	Canola	nucleus	12.22	14.31
CDY26395	Canola	nucleus	12.06	14.26
CDX99359	Canola	nucleus	11.9	13.86
CDX82583	Canola	nucleus	12.38	13.58
CDY39416	Canola	nucleus	12.54	13.47
CDY65933	Canola	nucleus	12.22	13.38

Protein Annotations

EnsemblPlants:CDY27590	EnsemblPlantsGene:GSBRNA2T00038330001	Gene3D:1.10.472.10	GO:A0A078GM10	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	PANTHER:PTHR10026	PANTHER:PTHR10026:SF100	ProteinID:CDY27590
ProteinID:CDY27590.1	SMART:SM00385	SUPFAM:SSF47954	TMHMM:TMhelix	UniParc:UPI0004EE353C	UniProt:A0A078GM10
MapMan:35.1	:	:	:	:	:

Description

BnaA09g28170DBnaA09g28170D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GM10]

Coordinates

chrLK032207:+:188744..194738

Molecular Weight (calculated)

69244.4 Da

IEP (calculated)

4.499

GRAVY (calculated)

-0.322

Length

622 amino acids

Sequence
(BLAST)

001: MIYTAIDNFY LTEEQLKTSP SRKDGIDEAT EVAFRIYGCD CDVIQEGGIL LNLESIDDHK QLIMATGQIV AASCVWLASK LEENPKRQDG SQGEKYSEVK
101: VELSRTERHI LNDGFCKKLG TWVNDDRDCD CKSMDEELTR YAATRIKEYM NNNRSKDEIV RILYQQHAIP VYLTLQAWDQ TEIESSGIFQ EYFVQSLLNP
201: DAETTDQGPT QIAPTSMGTA GRDTGASSSF LRVPPPTGDA LIPVQQAVSS GTAQNVPIVT SAQVPPLTGD SLSPVVQLPF LPQAVMATGQ VFSTGSSARS
301: LFPNLMLSFV CHVEHPHKFI SNYLATLETP PELRQEAWNL ANDSLRTTLC VRFRSEVVAC GVVYAAARRF QVPLPENPPW WKAFDADKSG IDQVCSVLAH
401: LYSLPKAQYI SVCKDGKTFT FSSRSGNPQA QSATKDVLPA GGDAGDTKGS AVNEFKDEVI TTPHEKATNS KKREAESNSL PIVGDSREKK IGIIDNRFDF
501: LYQATIFGVD FIVLFLWLFV VSHGSITVKT STGVFFIVYG ENYSQNYSQA QDLYNEIYGP PIYEYQVEEG GNEDLVLNNI DEVGLHVVEQ LEQTKDVPII
601: KADEVDYTKD QAFRYMDEYE KL

Best Arabidopsis Sequence Match ( AT2G26430.3 )
(BLAST)

001: MATGQVLFQR FYCKKSLAKF DVKIVAASCV WLASKLEENP KKARQVIIVF HRMECRRENL PLEHLDMYAK KFSELKVELS RTERHILKEM GFVCHVEHPH
101: KFISNYLATL ETPPELRQEA WNLANDSLRT TLCVRFRSEV VACGVVYAAA RRFQVPLPEN PPWWKAFDAD KSSIDEVCRV LAHLYSLPKA QYISVCKDGK
201: PFTFSSRSGN SQGQSATKDL LPGAGEAVDT KCTAGSANND LKDGMVTTPH EKATDSKKSG TESNSQPIVG DSSYERSKVG DRERESDREK ERGRERDRGR
301: SHRGRDSDRD SDRERDKLKD RSHHRSRDRL KDSGGHSDKS RHHSSRDRDY RDSSKDRRRH H

Arabidopsis Description

CYCL1-1Cyclin-L1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWV3]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.