Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra006723.1-P | Field mustard | nucleus | 99.62 | 99.62 |
| CDX71123 | Canola | nucleus | 92.8 | 92.8 |
| AT1G35440.1 | Thale cress | cytosol | 61.36 | 65.59 |
| Zm00001d038497_P001 | Maize | cytosol, extracellular, peroxisome | 26.89 | 44.1 |
| Zm00001d027790_P001 | Maize | cytosol | 43.18 | 42.22 |
| CDY03933 | Canola | cytosol | 36.74 | 30.99 |
| CDY60279 | Canola | cytosol | 36.36 | 30.67 |
| CDY11776 | Canola | cytosol | 36.36 | 30.0 |
| CDY24526 | Canola | cytosol, nucleus, peroxisome | 35.61 | 29.75 |
| CDX90099 | Canola | nucleus | 35.98 | 29.5 |
| CDY54138 | Canola | cytosol | 34.85 | 29.11 |
| Zm00001d020158_P001 | Maize | nucleus | 44.7 | 28.71 |
| TraesCS4A01G199600.1 | Wheat | nucleus | 45.08 | 28.61 |
| TraesCS4B01G115800.1 | Wheat | nucleus | 45.08 | 28.61 |
| CDX99363 | Canola | nucleus | 41.67 | 27.3 |
| TraesCS4A01G199300.1 | Wheat | nucleus | 48.86 | 27.27 |
| TraesCS4D01G113400.1 | Wheat | nucleus | 45.45 | 27.03 |
| TraesCS4D01G113600.1 | Wheat | nucleus | 48.86 | 26.88 |
| HORVU2Hr1G083340.2 | Barley | nucleus | 49.24 | 26.75 |
| Zm00001d026030_P014 | Maize | nucleus | 49.62 | 26.73 |
| TraesCS4B01G116000.1 | Wheat | nucleus | 48.48 | 26.72 |
| TraesCS2A01G323500.1 | Wheat | nucleus | 49.24 | 26.69 |
| EES11326 | Sorghum | nucleus | 49.24 | 26.53 |
| HORVU4Hr1G021250.6 | Barley | nucleus | 48.11 | 26.51 |
| TraesCS2B01G358600.1 | Wheat | nucleus | 48.86 | 26.49 |
| CDX78940 | Canola | nucleus | 40.53 | 26.42 |
| HORVU4Hr1G021220.13 | Barley | cytosol | 43.94 | 26.36 |
| TraesCS2D01G339400.1 | Wheat | nucleus | 49.24 | 26.32 |
| EER88086 | Sorghum | nucleus | 47.35 | 26.26 |
| GSMUA_Achr6P04070_001 | Banana | nucleus | 47.35 | 25.72 |
| CDX76472 | Canola | nucleus | 50.0 | 24.95 |
| CDY09329 | Canola | nucleus | 50.0 | 24.86 |
| CDY26395 | Canola | nucleus | 48.86 | 24.52 |
| TraesCS5A01G103900.2 | Wheat | nucleus | 48.86 | 24.52 |
| Os12t0485400-01 | Rice | nucleus | 49.24 | 23.94 |
| CDX99359 | Canola | nucleus | 48.11 | 23.78 |
| HORVU5Hr1G038970.16 | Barley | nucleus | 48.48 | 23.49 |
| Zm00001d027376_P002 | Maize | nucleus, plastid | 49.62 | 23.48 |
| TraesCS5D01G121900.1 | Wheat | nucleus | 49.24 | 23.21 |
| KRH50485 | Soybean | nucleus | 49.62 | 23.1 |
| KRG89442 | Soybean | nucleus | 49.62 | 23.06 |
| KRG89447 | Soybean | nucleus | 49.24 | 22.93 |
| CDY65933 | Canola | nucleus | 48.86 | 22.71 |
| CDX82583 | Canola | nucleus | 48.11 | 22.4 |
| HORVU0Hr1G007890.2 | Barley | cytosol, nucleus | 32.2 | 22.31 |
| CDY39416 | Canola | nucleus | 48.86 | 22.28 |
| VIT_00s0125g00270.t01 | Wine grape | nucleus | 48.86 | 22.01 |
| TraesCS5B01G112100.2 | Wheat | nucleus | 48.48 | 21.99 |
| CDY51052 | Canola | cytosol | 20.45 | 21.51 |
| KXG23456 | Sorghum | nucleus | 47.73 | 21.43 |
| OQU93178 | Sorghum | nucleus | 46.59 | 21.06 |
| CDY51053 | Canola | cytosol | 20.08 | 20.95 |
| CDY69301 | Canola | cytosol | 20.08 | 20.95 |
| CDY66082 | Canola | cytosol | 19.7 | 20.63 |
| CDX86291 | Canola | cytosol | 19.7 | 20.63 |
| CDX85352 | Canola | cytosol | 19.7 | 20.63 |
| CDY05665 | Canola | endoplasmic reticulum, extracellular | 7.95 | 19.27 |
| CDY51595 | Canola | nucleus | 28.03 | 17.92 |
| CDY03883 | Canola | nucleus | 28.03 | 17.75 |
| CDY27590 | Canola | cytosol | 21.59 | 9.16 |
| CDX84949 | Canola | cytosol | 7.2 | 5.41 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.9 | GO:A0A078DIB8 | EnsemblPlants:CDX88692 | ProteinID:CDX88692 | ProteinID:CDX88692.1 |
| InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSBRNA2T00148740001 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF036580 |
| PANTHER:PTHR10026 | PANTHER:PTHR10026:SF103 | SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | UniParc:UPI0004EF2E1C |
Description
BnaA03g09570D
Coordinates
chrLK031856:-:554419..556111
Molecular Weight (calculated)
30400.7 Da
IEP (calculated)
8.564
GRAVY (calculated)
-0.386
Length
264 amino acids
Sequence
(BLAST)
(BLAST)
001: MGERSWYMTR EEIEVKSPSR VDGIDSKQES FQRWSYSTFL QELGQRLHNP QKSIATSIVL CQRFFTRESL AKNDPKTISI ICMFIAGKVE GSPRPVDDVI
101: AKGCRVLHGK EPSTEMCARL KGAVLTGEKF VLSTLRFDVE IEHPYEPALH WVRRWIKVEM DAKRLYQAAW NFLNDGLRSS LCLQFRPSQI AAAALYLGSR
201: MTNVKIPCDG EKDWWLEFHV TKRQLCDICN QTLEIYQQDF LIPVKHEAKS KFGDGGLLRL EPGR
101: AKGCRVLHGK EPSTEMCARL KGAVLTGEKF VLSTLRFDVE IEHPYEPALH WVRRWIKVEM DAKRLYQAAW NFLNDGLRSS LCLQFRPSQI AAAALYLGSR
201: MTNVKIPCDG EKDWWLEFHV TKRQLCDICN QTLEIYQQDF LIPVKHEAKS KFGDGGLLRL EPGR
001: MAETKNWYNT REAIEKTSPS RLDGINLKEE TFQRWSYTSF LQELGQRLNN PQKTIATAIV LCQRFFTRQS LTKNDPKTVA IICMFIAGKV EGSPRPAGDV
101: VFVSYRVLFN KEPLRDVFER LKMTVLTGEK LVLSTLECDL EIEHPYKLVM DWVKRSVKTE DGRRLCQAAF NFVNDSLRTS LCLQFGPSQI ASAAIYIGLS
201: MCKMTLPCDG DKAWWREFDV TKRQLWEICD QMLDLYVQDF VVPRHGL
101: VFVSYRVLFN KEPLRDVFER LKMTVLTGEK LVLSTLECDL EIEHPYKLVM DWVKRSVKTE DGRRLCQAAF NFVNDSLRTS LCLQFGPSQI ASAAIYIGLS
201: MCKMTLPCDG DKAWWREFDV TKRQLWEICD QMLDLYVQDF VVPRHGL
Arabidopsis Description
CYCT1-1Putative cyclin-T1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8P7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.