Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G323500.1 | Wheat | nucleus | 98.77 | 98.77 |
| TraesCS2D01G339400.1 | Wheat | nucleus | 98.36 | 96.96 |
| HORVU2Hr1G083340.2 | Barley | nucleus | 96.71 | 96.91 |
| Zm00001d038497_P001 | Maize | cytosol, extracellular, peroxisome | 30.18 | 91.3 |
| EES11326 | Sorghum | nucleus | 86.24 | 85.71 |
| TraesCS4B01G116000.1 | Wheat | nucleus | 83.98 | 85.39 |
| Zm00001d026030_P014 | Maize | nucleus | 84.39 | 83.88 |
| EER88086 | Sorghum | nucleus | 74.33 | 76.05 |
| TraesCS4B01G115800.1 | Wheat | nucleus | 63.66 | 74.52 |
| Zm00001d027376_P002 | Maize | nucleus, plastid | 83.57 | 72.94 |
| GSMUA_Achr6P30140_001 | Banana | nucleus | 69.4 | 66.67 |
| GSMUA_Achr6P31620_001 | Banana | cytosol | 63.04 | 59.84 |
| TraesCS5B01G112100.2 | Wheat | nucleus | 66.94 | 56.01 |
| KRH50485 | Soybean | nucleus | 61.81 | 53.09 |
| KRG89442 | Soybean | nucleus | 61.81 | 52.99 |
| VIT_19s0027g01670.t01 | Wine grape | nucleus | 67.76 | 52.97 |
| VIT_00s0125g00270.t01 | Wine grape | nucleus | 63.66 | 52.9 |
| KRG89447 | Soybean | nucleus | 60.78 | 52.2 |
| AT1G35440.1 | Thale cress | cytosol | 26.28 | 51.82 |
| KRH13708 | Soybean | nucleus | 64.48 | 51.82 |
| CDY26395 | Canola | nucleus | 55.85 | 51.71 |
| KRH43745 | Soybean | nucleus | 64.07 | 51.06 |
| Bra020954.1-P | Field mustard | nucleus | 55.24 | 51.04 |
| CDX76472 | Canola | nucleus | 55.03 | 50.66 |
| CDY09329 | Canola | nucleus | 55.24 | 50.66 |
| AT4G19600.1 | Thale cress | nucleus | 56.26 | 50.65 |
| CDX71123 | Canola | nucleus | 27.31 | 50.38 |
| CDX99359 | Canola | nucleus | 54.83 | 50.0 |
| Bra025087.1-P | Field mustard | nucleus | 57.91 | 49.74 |
| Solyc10g078180.1.1 | Tomato | nucleus | 63.24 | 49.6 |
| CDX88692 | Canola | nucleus | 26.49 | 48.86 |
| CDX82583 | Canola | nucleus | 56.88 | 48.85 |
| Bra021950.1-P | Field mustard | nucleus | 56.06 | 48.84 |
| CDY39416 | Canola | nucleus | 57.91 | 48.7 |
| Bra006723.1-P | Field mustard | nucleus | 26.28 | 48.48 |
| CDY65933 | Canola | nucleus | 56.06 | 48.06 |
| AT5G45190.2 | Thale cress | nucleus | 58.11 | 47.97 |
| CDX99363 | Canola | nucleus | 38.6 | 46.65 |
| Bra013402.1-P | Field mustard | nucleus | 38.19 | 45.93 |
| CDX78940 | Canola | nucleus | 38.19 | 45.93 |
| CDY24526 | Canola | cytosol, nucleus, peroxisome | 29.57 | 45.57 |
| AT4G19560.1 | Thale cress | nucleus | 42.71 | 45.22 |
| CDY54138 | Canola | cytosol | 29.16 | 44.94 |
| Bra031514.1-P | Field mustard | cytosol | 29.16 | 44.94 |
| TraesCS3B01G227700.2 | Wheat | nucleus | 21.56 | 29.49 |
| TraesCS5B01G281600.1 | Wheat | peroxisome | 13.55 | 25.58 |
| TraesCS6B01G382700.1 | Wheat | peroxisome | 13.35 | 25.29 |
| TraesCS6B01G362300.1 | Wheat | nucleus | 19.71 | 23.41 |
| TraesCS6B01G125000.1 | Wheat | nucleus | 30.6 | 19.76 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G358600.1 | EnsemblPlantsGene:TraesCS2B01G358600 | Gene3D:1.10.472.10 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_N |
| PANTHER:PTHR10026 | PANTHER:PTHR10026:SF103 | PFAM:PF00134 | PIRSF:PIRSF036580 | SEG:seg | SMART:SM00385 |
| SUPFAM:SSF47954 | TIGR:cd00043 | MapMan:13.1.1.1.9 | MapMan:15.3.2.1.2 | : | : |
Description
No Description!
Coordinates
chr2B:+:511273482..511278466
Molecular Weight (calculated)
55620.6 Da
IEP (calculated)
8.090
GRAVY (calculated)
-0.916
Length
487 amino acids
Sequence
(BLAST)
(BLAST)
001: MDIMQTSDSS HHGIVENSPY TTPYDRRVEG DQLGASWYFS RKEIEENSLS RRDGIDLKKE SYLRKSYCTF LQDFGMRLKV PQVTIATAIV FCHRFFLRQS
101: HAKNDRQTIA TVCMFLAGKV EETPRPLKDV VLISYEIIHK KDPAAVARIK QKEVYEQQKE LLLIGERLVL VTLGFDMNVH HPYKPLVEAI KKFKVAQNAL
201: AQVAWNFVND GLRTSLCLQF KPHHIAAGAI FLAAKFLKVK LPADGEKVWW QEFDVTPRQL EEVSNQMLEL YEQNRVGPQP SQGNDTEGSS ASVVNQRAPV
301: KAEEPPAHET HQAPRQSSVP GRHGHDHPQP EKQTSNQRIP KSEARDGTAN SNEGTNMSSS MMDAMKKIDK DKVKAALEKR RKSKGDAGRK VEVMDDDDLI
401: ERELEHGVEL AAEDEKKHDR RQSWPHPAHR EDHQNTARKA ENTEEGELSL DGQEYRSPGP DNRKRKDAHE HRSNDRSAER DIKRPRP
101: HAKNDRQTIA TVCMFLAGKV EETPRPLKDV VLISYEIIHK KDPAAVARIK QKEVYEQQKE LLLIGERLVL VTLGFDMNVH HPYKPLVEAI KKFKVAQNAL
201: AQVAWNFVND GLRTSLCLQF KPHHIAAGAI FLAAKFLKVK LPADGEKVWW QEFDVTPRQL EEVSNQMLEL YEQNRVGPQP SQGNDTEGSS ASVVNQRAPV
301: KAEEPPAHET HQAPRQSSVP GRHGHDHPQP EKQTSNQRIP KSEARDGTAN SNEGTNMSSS MMDAMKKIDK DKVKAALEKR RKSKGDAGRK VEVMDDDDLI
401: ERELEHGVEL AAEDEKKHDR RQSWPHPAHR EDHQNTARKA ENTEEGELSL DGQEYRSPGP DNRKRKDAHE HRSNDRSAER DIKRPRP
001: MDEALNENAS GSESDASSVA SNLHDDEIIP WFFSREEIER NSPSRRDGID LKTETRLRDS YCTFLEILGE RLKVPQVTIA TAIFFCHRFF LRQSHAKNDR
101: QTIATVCMLL AGKVEETPVT LEDVIIASYE RIHKKDLAGA QRKEVYDQQK ELVLIGEELV LSTLNFDLCI SHPYKPLVEA IKKYMVEDAK TQLAQFAWNF
201: VNDCLRTTLC LQYQPHHIAA GAILLAAELP TVDLQSYREV LCQEFDITPC QLEDIRGQIL ELYERIPTSQ ESKVESSGGV AVVHQPISRD MASTEKCPSS
301: DIEGGSSQVN LSQSDDHSVH DGSRSEGIGE VNSESEAQKN LQDHSVGNIM VEKSDDVGVV QLKKDLQLHQ EEVESKQEKD KKSFEKDITK IDLMDEKDLT
401: ESEVEDEINK TMQTGRQIFM KVEDPDDNMT VEHSEIRNAN NSGVDDELVA DTCLINDSDL
101: QTIATVCMLL AGKVEETPVT LEDVIIASYE RIHKKDLAGA QRKEVYDQQK ELVLIGEELV LSTLNFDLCI SHPYKPLVEA IKKYMVEDAK TQLAQFAWNF
201: VNDCLRTTLC LQYQPHHIAA GAILLAAELP TVDLQSYREV LCQEFDITPC QLEDIRGQIL ELYERIPTSQ ESKVESSGGV AVVHQPISRD MASTEKCPSS
301: DIEGGSSQVN LSQSDDHSVH DGSRSEGIGE VNSESEAQKN LQDHSVGNIM VEKSDDVGVV QLKKDLQLHQ EEVESKQEKD KKSFEKDITK IDLMDEKDLT
401: ESEVEDEINK TMQTGRQIFM KVEDPDDNMT VEHSEIRNAN NSGVDDELVA DTCLINDSDL
Arabidopsis Description
CYCT1-2Cyclin-T1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q56YF8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.