CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH13708	Soybean	nucleus	94.27	95.05
Zm00001d038497_P001	Maize	cytosol, extracellular, peroxisome	24.06	91.3
Zm00001d027790_P001	Maize	cytosol	30.44	68.89
VIT_19s0027g01670.t01	Wine grape	nucleus	68.9	67.58
TraesCS4A01G199300.1	Wheat	nucleus	50.41	65.12
EES11326	Sorghum	nucleus	52.21	65.1
TraesCS4D01G113600.1	Wheat	nucleus	50.57	64.38
TraesCS2A01G323500.1	Wheat	nucleus	51.23	64.27
Zm00001d026030_P014	Maize	nucleus	51.39	64.08
TraesCS2B01G358600.1	Wheat	nucleus	51.06	64.07
HORVU2Hr1G083340.2	Barley	nucleus	50.9	63.99
TraesCS4B01G116000.1	Wheat	nucleus	50.08	63.88
HORVU4Hr1G021250.6	Barley	nucleus	49.75	63.47
TraesCS2D01G339400.1	Wheat	nucleus	51.23	63.36
HORVU0Hr1G007890.2	Barley	cytosol, nucleus	39.12	62.73
KRH50485	Soybean	nucleus	57.28	61.73
Solyc10g078180.1.1	Tomato	nucleus	62.68	61.67
KRG89442	Soybean	nucleus	56.3	60.56
EER88086	Sorghum	nucleus	46.81	60.08
KRG89447	Soybean	nucleus	55.16	59.44
TraesCS4B01G115800.1	Wheat	nucleus	40.26	59.13
TraesCS4A01G199600.1	Wheat	nucleus	40.26	59.13
Zm00001d020158_P001	Maize	nucleus	39.77	59.12
TraesCS4D01G113400.1	Wheat	nucleus	41.73	57.43
Zm00001d027376_P002	Maize	nucleus, plastid	52.21	57.17
Os12t0485400-01	Rice	nucleus	49.1	55.25
TraesCS5A01G103900.2	Wheat	nucleus	46.64	54.18
HORVU5Hr1G038970.16	Barley	nucleus	47.95	53.76
TraesCS5D01G121900.1	Wheat	nucleus	48.61	53.04
GSMUA_Achr6P04070_001	Banana	nucleus	41.57	52.26
TraesCS5B01G112100.2	Wheat	nucleus	49.26	51.72
HORVU4Hr1G021220.13	Barley	cytosol	33.39	46.36
OQU93178	Sorghum	nucleus	42.55	44.52
KXG23456	Sorghum	nucleus	41.08	42.69
KRG91263	Soybean	nucleus	20.46	33.33
KRH35545	Soybean	nucleus	20.13	33.06
KRH27619	Soybean	cytosol	18.82	30.91
KRG99632	Soybean	cytosol	11.13	26.88
KRH46635	Soybean	cytosol	11.13	26.88
KRH33999	Soybean	nucleus	18.49	25.22
KRG92800	Soybean	nucleus	18.17	25.06

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:100802312	MapMan:13.1.1.1.9	MapMan:15.3.2.1.2	EMBL:ACUP02004891	InterPro:Cyclin-like
InterPro:Cyclin-like_sf	InterPro:Cyclin_N	EnsemblPlantsGene:GLYMA_08G168800	GO:GO:0000307	GO:GO:0003674	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006464	GO:GO:0007049
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016538	GO:GO:0019538
GO:GO:0030234	GO:GO:0045737	GO:GO:0045944	GO:GO:1901409	UniProt:I1KU09	EnsemblPlants:KRH43745
ProteinID:KRH43745	ProteinID:KRH43745.1	PFAM:PF00134	PIRSF:PIRSF036580	PANTHER:PTHR10026	PANTHER:PTHR10026:SF103
SMART:SM00385	SUPFAM:SSF47954	UniParc:UPI00023383F1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr8:+:13402592..13409307

Molecular Weight (calculated)

69164.0 Da

IEP (calculated)

7.265

GRAVY (calculated)

-0.920

Length

611 amino acids

Sequence
(BLAST)

001: MAGLLLGDAS HHGTSQGVSQ RYSEEKLEDG SRWYFARKEI EEYSPSKHDG IDLKKETYLR KSYCTFLQDL GMRLKVPQVT IATAIIFCHR FFLRQSHAKN
101: DRRTIATVCM FLAGKVEETP RPLKDVILIS YEIIHKKDPA AIMRIKQKDV YEQHKELILL GERVVLATLG FDLNVHHPYK PLVEAIKKFK VAQNALAQVA
201: WNFVNDGLRT SLCLQFKPHH IAAGAIFLAA KFLKVKLPSD GEKVWWQEFD VTPRQLEEVS NQMLELYEQN RMPPSNDVEG GGTSNQTTAK APITNDETAA
301: AKSNSQSGAT RLETSKPVSS MAMFDSSVPN HVGRPISNHG RSGDYGSTEM KHRVEGDAKG NQYPERESLP FKENSHEAQD VVKSRSDNGE KEHESNAGGT
401: ETKELTELKD KHNSRNLDHR EDAFSRPPQE AVKKIDTDKV KAALEKRRKA AVHITKKTDV MDDDDLIERE LEDGIELAPQ NEKNKEKRQS WSKPSDRSDY
501: DNMHGRHQDH EDEQYHGVKG LSSYEPDLSA VEEGEVSALD DIGVGLPSPK SSNRKRKAGS SPERGVEGKR HNYGPGPHHN NRFDYMEDRN KVSRLGHTER
601: DSKRHVQENH V

Best Arabidopsis Sequence Match ( AT4G19560.1 )
(BLAST)

001: MDEALNENAS GSESDASSVA SNLHDDEIIP WFFSREEIER NSPSRRDGID LKTETRLRDS YCTFLEILGE RLKVPQVTIA TAIFFCHRFF LRQSHAKNDR
101: QTIATVCMLL AGKVEETPVT LEDVIIASYE RIHKKDLAGA QRKEVYDQQK ELVLIGEELV LSTLNFDLCI SHPYKPLVEA IKKYMVEDAK TQLAQFAWNF
201: VNDCLRTTLC LQYQPHHIAA GAILLAAELP TVDLQSYREV LCQEFDITPC QLEDIRGQIL ELYERIPTSQ ESKVESSGGV AVVHQPISRD MASTEKCPSS
301: DIEGGSSQVN LSQSDDHSVH DGSRSEGIGE VNSESEAQKN LQDHSVGNIM VEKSDDVGVV QLKKDLQLHQ EEVESKQEKD KKSFEKDITK IDLMDEKDLT
401: ESEVEDEINK TMQTGRQIFM KVEDPDDNMT VEHSEIRNAN NSGVDDELVA DTCLINDSDL

Arabidopsis Description

CYCT1-2Cyclin-T1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q56YF8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.