CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35545	Soybean	nucleus	95.47	96.24
KRH27619	Soybean	cytosol	69.6	70.16
VIT_05s0020g03070.t01	Wine grape	endoplasmic reticulum, extracellular	15.73	67.05
Solyc09g075760.2.1	Tomato	nucleus	56.0	57.07
PGSC0003DMT400081343	Potato	nucleus	57.07	53.5
TraesCS3D01G199600.2	Wheat	nucleus	42.67	44.94
TraesCS3B01G227700.2	Wheat	nucleus	42.67	44.94
GSMUA_Achr8P00390_001	Banana	mitochondrion	40.27	44.41
TraesCS3A01G196600.1	Wheat	nucleus	41.87	44.1
HORVU3Hr1G059980.2	Barley	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	41.33	40.36
Zm00001d040936_P002	Maize	plastid	34.4	39.33
OQU86869	Sorghum	cytosol, nucleus, plastid	32.8	38.68
KRH50485	Soybean	nucleus	34.4	22.75
KRG89442	Soybean	nucleus	34.4	22.71
KRG89447	Soybean	nucleus	34.13	22.57
KRH46635	Soybean	cytosol	14.13	20.95
KRH43745	Soybean	nucleus	33.33	20.46
KRG99632	Soybean	cytosol	13.6	20.16
KRH13708	Soybean	nucleus	32.53	20.13
KRG92800	Soybean	nucleus	18.4	15.58
KRH33999	Soybean	nucleus	18.4	15.4

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:100797811	MapMan:13.1.1.1.9	EMBL:ACUP02012673	InterPro:Cyclin-like	InterPro:Cyclin-like_sf
InterPro:Cyclin_N	EnsemblPlantsGene:GLYMA_20G143800	GO:GO:0000307	GO:GO:0003674	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006464	GO:GO:0007049	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016538	GO:GO:0019538	GO:GO:0030234
GO:GO:0045737	GO:GO:0045944	GO:GO:1901409	UniProt:K7N3F6	EnsemblPlants:KRG91263	ProteinID:KRG91263
ProteinID:KRG91263.1	PFAM:PF00134	PIRSF:PIRSF028758	PANTHER:PTHR10026	PANTHER:PTHR10026:SF67	SMART:SM00385
SUPFAM:SSF47954	UniParc:UPI000296FAAE	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:38236452..38243323

Molecular Weight (calculated)

43358.1 Da

IEP (calculated)

7.831

GRAVY (calculated)

-0.463

Length

375 amino acids

Sequence
(BLAST)

001: MSFVRNYQAE DCSLHSGYWS TFDGNNFGNS NRKRSRNNYY NRNCNIYNDN RTKFGDHGCN FNFYTADHAN YVRYDAVPSS LKRRKYSVPA WQESQQYYVP
101: PMVHDNIPSS YNFQGPPTRS DGDASTSASC KRDCSIFEDD KPVFMSRDEI DRHSPSRKDG IDVHHETHLR YSYCAFLQNL GMRLELPQNI IGTAMVLCHR
201: FFVRQSHACH DRFLIATAAL FLTAKSEEAP RPLNNILRTS SEILHKQDFA LLSYRFPVDW FEQYRERVLE AEQLILTTLN FELNVQHPYV PLTSVLNKLG
301: LSKTVLVNLA LNLVSEGLRS SLWLQFKPHH IAAGAAYLAA KFLNMDLAAY QNIWQEFQTT PSILQAVSQQ LMELF

Best Arabidopsis Sequence Match ( AT1G27630.1 )
(BLAST)

001: MGEEHPRKRS RQHFEAEARN VSLFESPQCE TSKWYFSREE IERFSPSRKD GIDLVKESFL RSSYCTFLQR LGMKLHVSQV TISCAMVMCH RFYMRQSHAK
101: NDWQTIATSS LFLACKAEDE PCQLSSVVVA SYEIIYEWDP SASIRIHQTE CYHEFKEIIL SGESLLLSTS AFHLDIELPY KPLAAALNRL NAWPDLATAA
201: WNFVHDWIRT TLCLQYKPHV IATATVHLAA TFQNAKVGSR RDWWLEFGVT TKLLKEVIQE MCTLIEVDRR RNMPPPPPPP RRELSWAIPA AVKPVHMARA
301: YPFHSYPLQS YRQAGIW

Arabidopsis Description

CYCT1-3Cyclin-T1-3 [Source:UniProtKB/Swiss-Prot;Acc:Q8LBC0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.