Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G199600.2 | Wheat | nucleus | 97.47 | 97.47 |
| TraesCS3B01G227700.2 | Wheat | nucleus | 96.63 | 96.63 |
| HORVU3Hr1G059980.2 | Barley | endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole | 91.01 | 84.38 |
| Zm00001d040936_P002 | Maize | plastid | 57.87 | 62.8 |
| OQU86869 | Sorghum | cytosol, nucleus, plastid | 53.93 | 60.38 |
| VIT_05s0020g03070.t01 | Wine grape | endoplasmic reticulum, extracellular | 12.36 | 50.0 |
| KRH35545 | Soybean | nucleus | 44.66 | 42.74 |
| KRG91263 | Soybean | nucleus | 44.1 | 41.87 |
| Solyc09g075760.2.1 | Tomato | nucleus | 42.13 | 40.76 |
| KRH27619 | Soybean | cytosol | 42.13 | 40.32 |
| GSMUA_Achr8P00390_001 | Banana | mitochondrion | 36.52 | 38.24 |
| PGSC0003DMT400081343 | Potato | nucleus | 42.42 | 37.75 |
| TraesCS4A01G199600.1 | Wheat | nucleus | 28.65 | 24.52 |
| TraesCS4A01G199300.1 | Wheat | nucleus | 28.93 | 21.78 |
| TraesCS2A01G323500.1 | Wheat | nucleus | 29.21 | 21.36 |
| TraesCS5A01G282200.1 | Wheat | peroxisome | 14.89 | 20.54 |
| TraesCS5A01G057600.1 | Wheat | mitochondrion | 11.52 | 20.4 |
| TraesCS6A01G349600.1 | Wheat | peroxisome | 14.61 | 20.23 |
| TraesCS5A01G103900.2 | Wheat | nucleus | 28.93 | 19.58 |
| TraesCS6A01G331500.1 | Wheat | nucleus | 20.22 | 17.48 |
| TraesCS6A01G096600.1 | Wheat | nucleus | 26.69 | 13.48 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G196600.1 | EnsemblPlantsGene:TraesCS3A01G196600 | Gene3D:1.10.472.10 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_N |
| PANTHER:PTHR10026 | PANTHER:PTHR10026:SF67 | PFAM:PF00134 | PIRSF:PIRSF028758 | SEG:seg | SMART:SM00385 |
| SUPFAM:SSF47954 | TIGR:cd00043 | MapMan:13.1.1.1.9 | : | : | : |
Description
No Description!
Coordinates
chr3A:-:299555206..299565660
Molecular Weight (calculated)
40748.5 Da
IEP (calculated)
8.731
GRAVY (calculated)
-0.468
Length
356 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFSQPFHPD LVRHRPHPYS HDHPPPHRPR RRGRDHDDAY HTHSQPYPQP CPHANTAPYH PRHDPLALSH LQEPIFPAPS QRAPGTPPPK RARRAPEPRC
101: DPPVAAVPRL LPTRHPKDGD ARALLSREEI ERRSPSWKDG IDSALEARLR ASYCAYLRCL GFRLGLPQTT VATAVVYCHR FFFHRSHACN DRFLVATAAL
201: FLASKTEETT CLLNTILRAS CEVSENQEFN LLPYMSRGQN WFELYRESVI QAEQMILTTL DFELEVVHPY TSLSSALSRL GLSHSVIFNV ALSLINEGLR
301: SSLWLQFKPH HIAAGAAFLA GKFLRYDITF HQNFWHEFKT TPHTVQDVVQ QLKELL
101: DPPVAAVPRL LPTRHPKDGD ARALLSREEI ERRSPSWKDG IDSALEARLR ASYCAYLRCL GFRLGLPQTT VATAVVYCHR FFFHRSHACN DRFLVATAAL
201: FLASKTEETT CLLNTILRAS CEVSENQEFN LLPYMSRGQN WFELYRESVI QAEQMILTTL DFELEVVHPY TSLSSALSRL GLSHSVIFNV ALSLINEGLR
301: SSLWLQFKPH HIAAGAAFLA GKFLRYDITF HQNFWHEFKT TPHTVQDVVQ QLKELL
001: MAGVLAGDCS FGESGVSSYS RNSNEKQDEV ARWYFGRKEI EENSPSRLDS IDLKKETYLR KSYCTFLQDL GMRLKVPQVT IATAIIFCHR FFIRQSHARN
101: DRRTIATVCM FLAGKVEETP RPLKDVIVVS YEIIHKKDPT TAQKIKQKEV YEQQKELILN GEKIVLSTLG FDFNVYHPYK PLVEAIKKFK VAQNALAQVA
201: WNFVNDGLRT SLCLQFKPHH IAAGAIFLAA KFLKVKLPSD GEKVWWQEFD VTPRQLEDVS NQMLELYEQN RVPASQVSEV ESSVGGGSAH HVGSRPSARL
301: THEHSNSDNL GGSTKATQNR SNDNGSGEAG SVITEQKGER DTETKDSMHT ESHPAHKSRS GVEAPGEDKI EKAGAHFPED DKSRIVGTAD VTVSQSPKDI
401: KMFRDKVKAK LEAKKVQGEK TRKKDLVDED DLIERELEDV ELAVEDDKDI QNKSSMGTEH GEILDGNNLV VNTEEGEMID DVSSTMPSRK RKMESPCEKQ
501: LGEGKRRHDN SENVEEGQKT NPGGSSHSYG DREPRRHSQE R
101: DRRTIATVCM FLAGKVEETP RPLKDVIVVS YEIIHKKDPT TAQKIKQKEV YEQQKELILN GEKIVLSTLG FDFNVYHPYK PLVEAIKKFK VAQNALAQVA
201: WNFVNDGLRT SLCLQFKPHH IAAGAIFLAA KFLKVKLPSD GEKVWWQEFD VTPRQLEDVS NQMLELYEQN RVPASQVSEV ESSVGGGSAH HVGSRPSARL
301: THEHSNSDNL GGSTKATQNR SNDNGSGEAG SVITEQKGER DTETKDSMHT ESHPAHKSRS GVEAPGEDKI EKAGAHFPED DKSRIVGTAD VTVSQSPKDI
401: KMFRDKVKAK LEAKKVQGEK TRKKDLVDED DLIERELEDV ELAVEDDKDI QNKSSMGTEH GEILDGNNLV VNTEEGEMID DVSSTMPSRK RKMESPCEKQ
501: LGEGKRRHDN SENVEEGQKT NPGGSSHSYG DREPRRHSQE R
Arabidopsis Description
CYCT1-4Cyclin-T1-4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GYM6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.