CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG91263	Soybean	nucleus	70.16	69.6
KRH35545	Soybean	nucleus	69.35	69.35
VIT_05s0020g03070.t01	Wine grape	endoplasmic reticulum, extracellular	12.63	53.41
Solyc09g075760.2.1	Tomato	nucleus	50.27	50.82
PGSC0003DMT400081343	Potato	nucleus	51.88	48.25
TraesCS3D01G199600.2	Wheat	nucleus	41.13	42.98
TraesCS3B01G227700.2	Wheat	nucleus	41.13	42.98
GSMUA_Achr8P00390_001	Banana	mitochondrion	38.71	42.35
TraesCS3A01G196600.1	Wheat	nucleus	40.32	42.13
HORVU3Hr1G059980.2	Barley	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	40.59	39.32
Zm00001d040936_P002	Maize	plastid	33.33	37.8
OQU86869	Sorghum	cytosol, nucleus, plastid	31.72	37.11
KRH50485	Soybean	nucleus	31.72	20.81
KRG89442	Soybean	nucleus	31.72	20.77
KRG89447	Soybean	nucleus	31.45	20.63
KRH46635	Soybean	cytosol	13.98	20.55
KRG99632	Soybean	cytosol	13.44	19.76
KRH43745	Soybean	nucleus	30.91	18.82
KRH13708	Soybean	nucleus	30.65	18.81
KRG92800	Soybean	nucleus	16.94	14.22
KRH33999	Soybean	nucleus	16.94	14.06

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:100782957	MapMan:13.1.1.1.9	EMBL:ACUP02006730	InterPro:Cyclin-like	InterPro:Cyclin-like_sf
InterPro:Cyclin_N	EnsemblPlantsGene:GLYMA_11G004500	GO:GO:0000307	GO:GO:0003674	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006464	GO:GO:0007049	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016538	GO:GO:0019538	GO:GO:0030234
GO:GO:0045737	GO:GO:0045944	GO:GO:1901409	UniProt:K7LMB7	EnsemblPlants:KRH27619	ProteinID:KRH27619
ProteinID:KRH27619.1	PFAM:PF00134	PIRSF:PIRSF028758	PANTHER:PTHR10026	PANTHER:PTHR10026:SF67	SMART:SM00385
SUPFAM:SSF47954	UniParc:UPI000233D165	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr11:+:331736..339290

Molecular Weight (calculated)

42642.6 Da

IEP (calculated)

7.002

GRAVY (calculated)

-0.279

Length

372 amino acids

Sequence
(BLAST)

001: MSFGWNLQAP GHDLHGVYWS TCDGNNFNNG NRKRSRISYY HGNSNIHNNY WAEHGVYSNV YHFDYGNHFQ CDADPLSLKR RKHSSPICEN NQKYYLPSTV
101: QGNIPSSVNF QASPTRSNVD TSVSPICKLD CSIFEDKELV FMSRDEIDRC SPSRKDGIDV LRERHLRYSY CAFLQNLGMW LNLPQTTIGT AMVLCHRFFV
201: RRSHACHDRF LIATAALFLV GKSEETPCPL NNVLQASSEI LHEQDFTLLS YLLPVGWFEK YHDRVLEAEL LLLTTLNFEL NVEHPYTSLT SVLNKLDPSK
301: TVLVNLALNL ISKGLQSSLW LQYKPHHIAA GAAYLASMFL KIDLTAYHNI WQEFEATPSI LRDISQQLME LV

Best Arabidopsis Sequence Match ( AT1G27630.1 )
(BLAST)

001: MGEEHPRKRS RQHFEAEARN VSLFESPQCE TSKWYFSREE IERFSPSRKD GIDLVKESFL RSSYCTFLQR LGMKLHVSQV TISCAMVMCH RFYMRQSHAK
101: NDWQTIATSS LFLACKAEDE PCQLSSVVVA SYEIIYEWDP SASIRIHQTE CYHEFKEIIL SGESLLLSTS AFHLDIELPY KPLAAALNRL NAWPDLATAA
201: WNFVHDWIRT TLCLQYKPHV IATATVHLAA TFQNAKVGSR RDWWLEFGVT TKLLKEVIQE MCTLIEVDRR RNMPPPPPPP RRELSWAIPA AVKPVHMARA
301: YPFHSYPLQS YRQAGIW

Arabidopsis Description

CYCT1-3Cyclin-T1-3 [Source:UniProtKB/Swiss-Prot;Acc:Q8LBC0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.