CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG89442	Soybean	nucleus	97.71	97.54
KRH50485	Soybean	nucleus	94.0	94.0
Zm00001d038497_P001	Maize	cytosol, extracellular, peroxisome	25.4	89.44
Zm00001d027790_P001	Maize	cytosol	33.51	70.37
TraesCS4A01G199300.1	Wheat	nucleus	51.85	62.16
TraesCS4D01G113600.1	Wheat	nucleus	52.56	62.08
EES11326	Sorghum	nucleus	53.62	62.04
TraesCS4B01G116000.1	Wheat	nucleus	51.68	61.17
HORVU4Hr1G021250.6	Barley	nucleus	51.68	61.17
TraesCS2B01G358600.1	Wheat	nucleus	52.2	60.78
HORVU2Hr1G083340.2	Barley	nucleus	52.03	60.7
Zm00001d026030_P014	Maize	nucleus	52.38	60.61
TraesCS2A01G323500.1	Wheat	nucleus	52.03	60.57
TraesCS2D01G339400.1	Wheat	nucleus	52.2	59.92
Zm00001d020158_P001	Maize	nucleus	43.39	59.85
HORVU0Hr1G007890.2	Barley	cytosol, nucleus	40.04	59.58
CDY26395	Canola	nucleus	54.32	58.56
Bra020954.1-P	Field mustard	nucleus	54.14	58.25
VIT_00s0125g00270.t01	Wine grape	nucleus	59.79	57.85
CDX76472	Canola	nucleus	53.97	57.84
EER88086	Sorghum	nucleus	48.32	57.56
CDY09329	Canola	nucleus	53.79	57.44
AT4G19600.1	Thale cress	nucleus	53.97	56.56
Os12t0485400-01	Rice	nucleus	53.97	56.35
TraesCS4A01G199600.1	Wheat	nucleus	41.09	56.01
TraesCS4B01G115800.1	Wheat	nucleus	40.92	55.77
TraesCS4D01G113400.1	Wheat	nucleus	43.56	55.63
CDX99359	Canola	nucleus	52.38	55.62
Bra021950.1-P	Field mustard	nucleus	54.5	55.28
KRH43745	Soybean	nucleus	59.44	55.16
KRH13708	Soybean	nucleus	58.55	54.79
CDY65933	Canola	nucleus	54.85	54.75
Bra025087.1-P	Field mustard	nucleus	54.67	54.67
CDX82583	Canola	nucleus	54.32	54.32
Zm00001d027376_P002	Maize	nucleus, plastid	52.91	53.76
TraesCS5A01G103900.2	Wheat	nucleus	49.74	53.61
AT5G45190.2	Thale cress	nucleus	55.73	53.56
CDY39416	Canola	nucleus	54.5	53.37
HORVU5Hr1G038970.16	Barley	nucleus	50.97	53.03
AT1G35440.1	Thale cress	cytosol	22.93	52.63
TraesCS5D01G121900.1	Wheat	nucleus	51.85	52.5
GSMUA_Achr6P04070_001	Banana	nucleus	44.8	52.26
TraesCS5B01G112100.2	Wheat	nucleus	52.38	51.03
CDX71123	Canola	nucleus	23.46	50.38
CDX78940	Canola	nucleus	35.27	49.38
Bra013402.1-P	Field mustard	nucleus	35.27	49.38
CDX99363	Canola	nucleus	35.1	49.38
CDX88692	Canola	nucleus	22.93	49.24
Bra006723.1-P	Field mustard	nucleus	22.75	48.86
CDY54138	Canola	cytosol	26.45	47.47
CDY24526	Canola	cytosol, nucleus, peroxisome	26.45	47.47
Bra031514.1-P	Field mustard	cytosol	26.28	47.15
AT4G19560.1	Thale cress	nucleus	38.1	46.96
HORVU4Hr1G021220.13	Barley	cytosol	34.74	44.77
OQU93178	Sorghum	nucleus	45.86	44.52
KXG23456	Sorghum	nucleus	44.27	42.69
KRG91263	Soybean	nucleus	22.57	34.13
KRH35545	Soybean	nucleus	22.22	33.87
KRH27619	Soybean	cytosol	20.63	31.45
KRH33999	Soybean	nucleus	19.93	25.22
KRG92800	Soybean	nucleus	19.58	25.06
KRH46635	Soybean	cytosol	10.93	24.51
KRG99632	Soybean	cytosol	10.93	24.51

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:100808446	MapMan:13.1.1.1.9	MapMan:15.3.2.1.2	EMBL:ACUP02012208	InterPro:Cyclin-like
InterPro:Cyclin-like_sf	InterPro:Cyclin_N	EnsemblPlantsGene:GLYMA_20G023800	GO:GO:0000307	GO:GO:0003674	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006464	GO:GO:0007049
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016538	GO:GO:0019538
GO:GO:0030234	GO:GO:0045737	GO:GO:0045944	GO:GO:1901409	UniProt:K7N0X7	EnsemblPlants:KRG89447
ProteinID:KRG89447	ProteinID:KRG89447.1	ProteinID:KRG89448.1	PFAM:PF00134	PIRSF:PIRSF036580	PANTHER:PTHR10026
PANTHER:PTHR10026:SF103	SMART:SM00385	SUPFAM:SSF47954	UniParc:UPI000295B638	SEG:seg	:

Description

hypothetical protein

Coordinates

chr20:-:2547295..2551676

Molecular Weight (calculated)

64261.7 Da

IEP (calculated)

6.480

GRAVY (calculated)

-0.914

Length

567 amino acids

Sequence
(BLAST)

001: MTGLMPGELP HHGTPDGNSG KSSQDKQEES LGRWYMSRKE IEEHSPSRKD GIDLKKETYL RKSYCTFLQD LGMRLKVPQV TIATAIIFCH RFFLRQSHAK
101: NDRRTIATVC MFLAGKVEET PRPLKDVILV SYEIIHKKDP AAAQRIKQKE VYEQQKELIL LGERVVLATL GFDLNVQHPY KPLMEAIKKF VAKNALALVA
201: WNFVNDGLRT SLCLQFKPHH IAAGAIFLAA KFLKVKLPSD GEKVWWQEFD VTPRQLEEVC NQMLELYEQS RLPPAQGSEV EGSARGTRAA SKAPSANEEQ
301: ASKQISSQAP QHSSVERTGV PQRGTENQSN DGSAEMGSDI TDHNLDIRES HNSEQLTHQD NKREVSNRSK SGTERDQDII VGTKEGAEVG RRDESALNNS
401: GSNVGRNLER REVPLGHSPN EAIKIDKDKL KALAAMGKKR KEQRGEMALK KDVMDEDDLI ERELEDGIEL AVEDEKNKRE RRQNWSKPDA EDHHGGENHE
501: ETRDGWYMNM KAQFQKDMEE DNAEEAEMID DASSLLNNRK RRMGSPPGRQ PEMKKHLDSS YHNDLAE

Best Arabidopsis Sequence Match ( AT4G19560.1 )
(BLAST)

001: MDEALNENAS GSESDASSVA SNLHDDEIIP WFFSREEIER NSPSRRDGID LKTETRLRDS YCTFLEILGE RLKVPQVTIA TAIFFCHRFF LRQSHAKNDR
101: QTIATVCMLL AGKVEETPVT LEDVIIASYE RIHKKDLAGA QRKEVYDQQK ELVLIGEELV LSTLNFDLCI SHPYKPLVEA IKKYMVEDAK TQLAQFAWNF
201: VNDCLRTTLC LQYQPHHIAA GAILLAAELP TVDLQSYREV LCQEFDITPC QLEDIRGQIL ELYERIPTSQ ESKVESSGGV AVVHQPISRD MASTEKCPSS
301: DIEGGSSQVN LSQSDDHSVH DGSRSEGIGE VNSESEAQKN LQDHSVGNIM VEKSDDVGVV QLKKDLQLHQ EEVESKQEKD KKSFEKDITK IDLMDEKDLT
401: ESEVEDEINK TMQTGRQIFM KVEDPDDNMT VEHSEIRNAN NSGVDDELVA DTCLINDSDL

Arabidopsis Description

CYCT1-2Cyclin-T1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q56YF8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.