Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDX71123 | Canola | nucleus | 68.83 | 64.39 |
CDX88692 | Canola | nucleus | 65.59 | 61.36 |
Bra006723.1-P | Field mustard | nucleus | 65.18 | 60.98 |
Zm00001d038497_P001 | Maize | cytosol, extracellular, peroxisome | 29.55 | 45.34 |
Zm00001d027790_P001 | Maize | cytosol | 46.96 | 42.96 |
AT1G27630.1 | Thale cress | cytosol | 39.27 | 30.6 |
TraesCS4B01G115800.1 | Wheat | nucleus | 48.58 | 28.85 |
TraesCS4A01G199600.1 | Wheat | nucleus | 48.18 | 28.61 |
Zm00001d020158_P001 | Maize | nucleus | 47.37 | 28.47 |
TraesCS4A01G199300.1 | Wheat | nucleus | 52.23 | 27.27 |
TraesCS4D01G113400.1 | Wheat | nucleus | 48.99 | 27.25 |
TraesCS4D01G113600.1 | Wheat | nucleus | 52.23 | 26.88 |
HORVU2Hr1G083340.2 | Barley | nucleus | 52.23 | 26.54 |
TraesCS4B01G116000.1 | Wheat | nucleus | 51.42 | 26.51 |
TraesCS2A01G323500.1 | Wheat | nucleus | 52.23 | 26.49 |
EER88086 | Sorghum | nucleus | 51.01 | 26.47 |
EES11326 | Sorghum | nucleus | 52.23 | 26.33 |
TraesCS2B01G358600.1 | Wheat | nucleus | 51.82 | 26.28 |
Zm00001d026030_P014 | Maize | nucleus | 51.82 | 26.12 |
TraesCS2D01G339400.1 | Wheat | nucleus | 52.23 | 26.11 |
HORVU4Hr1G021250.6 | Barley | nucleus | 50.61 | 26.1 |
HORVU4Hr1G021220.13 | Barley | cytosol | 46.15 | 25.91 |
GSMUA_Achr6P04070_001 | Banana | nucleus | 50.2 | 25.51 |
AT4G19560.1 | Thale cress | nucleus | 46.15 | 24.78 |
TraesCS5A01G103900.2 | Wheat | nucleus | 52.23 | 24.52 |
AT4G19600.1 | Thale cress | nucleus | 52.63 | 24.03 |
HORVU5Hr1G038970.16 | Barley | nucleus | 52.23 | 23.67 |
AT5G48630.2 | Thale cress | cytosol, nucleus, plastid | 24.29 | 23.44 |
TraesCS5D01G121900.1 | Wheat | nucleus | 52.23 | 23.04 |
KRH50485 | Soybean | nucleus | 52.63 | 22.93 |
KRG89447 | Soybean | nucleus | 52.63 | 22.93 |
Os12t0485400-01 | Rice | nucleus | 50.2 | 22.84 |
Zm00001d027376_P002 | Maize | nucleus, plastid | 51.42 | 22.76 |
KRG89442 | Soybean | nucleus | 52.23 | 22.71 |
AT5G45190.2 | Thale cress | nucleus | 53.44 | 22.37 |
VIT_00s0125g00270.t01 | Wine grape | nucleus | 52.63 | 22.18 |
AT5G48640.1 | Thale cress | cytosol | 22.67 | 22.13 |
HORVU0Hr1G007890.2 | Barley | cytosol, nucleus | 34.01 | 22.05 |
TraesCS5B01G112100.2 | Wheat | nucleus | 51.82 | 21.99 |
KXG23456 | Sorghum | nucleus | 47.37 | 19.9 |
OQU93178 | Sorghum | nucleus | 46.56 | 19.69 |
AT2G26430.1 | Thale cress | cytosol | 32.39 | 19.23 |
Protein Annotations
Gene3D:1.10.472.10 | MapMan:13.1.1.1.9 | EntrezGene:840436 | ProteinID:AAG52114.1 | ProteinID:AEE31794.1 | ArrayExpress:AT1G35440 |
EnsemblPlantsGene:AT1G35440 | RefSeq:AT1G35440 | TAIR:AT1G35440 | RefSeq:AT1G35440-TAIR-G | EnsemblPlants:AT1G35440.1 | TAIR:AT1G35440.1 |
Unigene:At.65959 | Symbol:CYCT1;1 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_N | GO:GO:0000307 |
GO:GO:0003674 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
GO:GO:0006464 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
GO:GO:0016538 | GO:GO:0019538 | GO:GO:0030234 | GO:GO:0045737 | GO:GO:0045944 | GO:GO:0051301 |
GO:GO:1901409 | RefSeq:NP_174775.1 | PFAM:PF00134 | PIRSF:PIRSF036580 | PANTHER:PTHR10026 | PANTHER:PTHR10026:SF103 |
UniProt:Q9C8P7 | SMART:SM00385 | SUPFAM:SSF47954 | UniParc:UPI00000A82BE | : | : |
Description
CYCT1-1Putative cyclin-T1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8P7]
Coordinates
chr1:-:13035294..13036037
Molecular Weight (calculated)
28539.6 Da
IEP (calculated)
8.194
GRAVY (calculated)
-0.239
Length
247 amino acids
Sequence
(BLAST)
(BLAST)
001: MAETKNWYNT REAIEKTSPS RLDGINLKEE TFQRWSYTSF LQELGQRLNN PQKTIATAIV LCQRFFTRQS LTKNDPKTVA IICMFIAGKV EGSPRPAGDV
101: VFVSYRVLFN KEPLRDVFER LKMTVLTGEK LVLSTLECDL EIEHPYKLVM DWVKRSVKTE DGRRLCQAAF NFVNDSLRTS LCLQFGPSQI ASAAIYIGLS
201: MCKMTLPCDG DKAWWREFDV TKRQLWEICD QMLDLYVQDF VVPRHGL
101: VFVSYRVLFN KEPLRDVFER LKMTVLTGEK LVLSTLECDL EIEHPYKLVM DWVKRSVKTE DGRRLCQAAF NFVNDSLRTS LCLQFGPSQI ASAAIYIGLS
201: MCKMTLPCDG DKAWWREFDV TKRQLWEICD QMLDLYVQDF VVPRHGL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.