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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX71123 Canola nucleus 68.83 64.39
CDX88692 Canola nucleus 65.59 61.36
Bra006723.1-P Field mustard nucleus 65.18 60.98
Zm00001d038497_P001 Maize cytosol, extracellular, peroxisome 29.55 45.34
Zm00001d027790_P001 Maize cytosol 46.96 42.96
AT1G27630.1 Thale cress cytosol 39.27 30.6
TraesCS4B01G115800.1 Wheat nucleus 48.58 28.85
TraesCS4A01G199600.1 Wheat nucleus 48.18 28.61
Zm00001d020158_P001 Maize nucleus 47.37 28.47
TraesCS4A01G199300.1 Wheat nucleus 52.23 27.27
TraesCS4D01G113400.1 Wheat nucleus 48.99 27.25
TraesCS4D01G113600.1 Wheat nucleus 52.23 26.88
HORVU2Hr1G083340.2 Barley nucleus 52.23 26.54
TraesCS4B01G116000.1 Wheat nucleus 51.42 26.51
TraesCS2A01G323500.1 Wheat nucleus 52.23 26.49
EER88086 Sorghum nucleus 51.01 26.47
EES11326 Sorghum nucleus 52.23 26.33
TraesCS2B01G358600.1 Wheat nucleus 51.82 26.28
Zm00001d026030_P014 Maize nucleus 51.82 26.12
TraesCS2D01G339400.1 Wheat nucleus 52.23 26.11
HORVU4Hr1G021250.6 Barley nucleus 50.61 26.1
HORVU4Hr1G021220.13 Barley cytosol 46.15 25.91
GSMUA_Achr6P04070_001 Banana nucleus 50.2 25.51
AT4G19560.1 Thale cress nucleus 46.15 24.78
TraesCS5A01G103900.2 Wheat nucleus 52.23 24.52
AT4G19600.1 Thale cress nucleus 52.63 24.03
HORVU5Hr1G038970.16 Barley nucleus 52.23 23.67
AT5G48630.2 Thale cress cytosol, nucleus, plastid 24.29 23.44
TraesCS5D01G121900.1 Wheat nucleus 52.23 23.04
KRH50485 Soybean nucleus 52.63 22.93
KRG89447 Soybean nucleus 52.63 22.93
Os12t0485400-01 Rice nucleus 50.2 22.84
Zm00001d027376_P002 Maize nucleus, plastid 51.42 22.76
KRG89442 Soybean nucleus 52.23 22.71
AT5G45190.2 Thale cress nucleus 53.44 22.37
VIT_00s0125g00270.t01 Wine grape nucleus 52.63 22.18
AT5G48640.1 Thale cress cytosol 22.67 22.13
HORVU0Hr1G007890.2 Barley cytosol, nucleus 34.01 22.05
TraesCS5B01G112100.2 Wheat nucleus 51.82 21.99
KXG23456 Sorghum nucleus 47.37 19.9
OQU93178 Sorghum nucleus 46.56 19.69
AT2G26430.1 Thale cress cytosol 32.39 19.23
Protein Annotations
Gene3D:1.10.472.10MapMan:13.1.1.1.9EntrezGene:840436ProteinID:AAG52114.1ProteinID:AEE31794.1ArrayExpress:AT1G35440
EnsemblPlantsGene:AT1G35440RefSeq:AT1G35440TAIR:AT1G35440RefSeq:AT1G35440-TAIR-GEnsemblPlants:AT1G35440.1TAIR:AT1G35440.1
Unigene:At.65959Symbol:CYCT1;1InterPro:Cyclin-likeInterPro:Cyclin-like_sfInterPro:Cyclin_NGO:GO:0000307
GO:GO:0003674GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139
GO:GO:0006464GO:GO:0007049GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987
GO:GO:0016538GO:GO:0019538GO:GO:0030234GO:GO:0045737GO:GO:0045944GO:GO:0051301
GO:GO:1901409RefSeq:NP_174775.1PFAM:PF00134PIRSF:PIRSF036580PANTHER:PTHR10026PANTHER:PTHR10026:SF103
UniProt:Q9C8P7SMART:SM00385SUPFAM:SSF47954UniParc:UPI00000A82BE::
Description
CYCT1-1Putative cyclin-T1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8P7]
Coordinates
chr1:-:13035294..13036037
Molecular Weight (calculated)
28539.6 Da
IEP (calculated)
8.194
GRAVY (calculated)
-0.239
Length
247 amino acids
Sequence
(BLAST)
001: MAETKNWYNT REAIEKTSPS RLDGINLKEE TFQRWSYTSF LQELGQRLNN PQKTIATAIV LCQRFFTRQS LTKNDPKTVA IICMFIAGKV EGSPRPAGDV
101: VFVSYRVLFN KEPLRDVFER LKMTVLTGEK LVLSTLECDL EIEHPYKLVM DWVKRSVKTE DGRRLCQAAF NFVNDSLRTS LCLQFGPSQI ASAAIYIGLS
201: MCKMTLPCDG DKAWWREFDV TKRQLWEICD QMLDLYVQDF VVPRHGL
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.