Factsheet for TraesCS4B01G115800.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G199600.1	Wheat	nucleus	96.88	96.88
TraesCS4D01G113400.1	Wheat	nucleus	89.9	84.23
Zm00001d038497_P001	Maize	cytosol, extracellular, peroxisome	31.97	82.61
TraesCS2B01G358600.1	Wheat	nucleus	74.52	63.66
TraesCS4B01G116000.1	Wheat	nucleus	73.08	63.47
EES11326	Sorghum	nucleus	72.6	61.63
Zm00001d026030_P014	Maize	nucleus	71.88	61.02
HORVU4Hr1G021220.13	Barley	cytosol	62.98	59.55
EER88086	Sorghum	nucleus	63.22	55.25
Zm00001d027376_P002	Maize	nucleus, plastid	70.67	52.69
GSMUA_Achr6P30140_001	Banana	nucleus	61.54	50.49
AT1G35440.1	Thale cress	cytosol	28.85	48.58
CDX71123	Canola	nucleus	29.57	46.59
GSMUA_Achr6P31620_001	Banana	cytosol	56.25	45.61
CDX88692	Canola	nucleus	28.61	45.08
Bra006723.1-P	Field mustard	nucleus	28.37	44.7
TraesCS5B01G112100.2	Wheat	nucleus	60.82	43.47
CDY24526	Canola	cytosol, nucleus, peroxisome	32.69	43.04
CDY26395	Canola	nucleus	54.09	42.78
CDY54138	Canola	cytosol	32.21	42.41
Bra031514.1-P	Field mustard	cytosol	32.21	42.41
Bra020954.1-P	Field mustard	nucleus	53.37	42.13
AT4G19600.1	Thale cress	nucleus	54.57	41.96
KRH50485	Soybean	nucleus	56.97	41.8
KRG89442	Soybean	nucleus	56.97	41.73
CDY09329	Canola	nucleus	53.12	41.62
CDX76472	Canola	nucleus	52.88	41.59
CDX78940	Canola	nucleus	40.38	41.48
Bra013402.1-P	Field mustard	nucleus	40.38	41.48
VIT_19s0027g01670.t01	Wine grape	nucleus	61.78	41.25
CDX99359	Canola	nucleus	52.88	41.2
VIT_00s0125g00270.t01	Wine grape	nucleus	57.93	41.13
CDX99363	Canola	nucleus	39.66	40.94
KRG89447	Soybean	nucleus	55.77	40.92
Bra025087.1-P	Field mustard	nucleus	55.53	40.74
Bra021950.1-P	Field mustard	nucleus	54.33	40.43
KRH43745	Soybean	nucleus	59.13	40.26
CDY65933	Canola	nucleus	54.57	39.96
KRH13708	Soybean	nucleus	58.17	39.93
CDY39416	Canola	nucleus	55.53	39.9
CDX82583	Canola	nucleus	54.33	39.86
AT5G45190.2	Thale cress	nucleus	55.77	39.32
Solyc10g078180.1.1	Tomato	nucleus	57.45	38.49
AT4G19560.1	Thale cress	nucleus	42.31	38.26
TraesCS3B01G227700.2	Wheat	nucleus	25.0	29.21
TraesCS6B01G382700.1	Wheat	peroxisome	14.66	23.74
TraesCS5B01G281600.1	Wheat	peroxisome	14.42	23.26
TraesCS6B01G362300.1	Wheat	nucleus	20.91	21.22
TraesCS6B01G125000.1	Wheat	nucleus	32.69	18.04

Protein Annotations

EnsemblPlants:TraesCS4B01G115800.1	EnsemblPlantsGene:TraesCS4B01G115800	Gene3D:1.10.472.10	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_N
PANTHER:PTHR10026	PANTHER:PTHR10026:SF103	PFAM:PF00134	PIRSF:PIRSF036580	SEG:seg	SMART:SM00385
SUPFAM:SSF47954	TIGR:cd00043	MapMan:13.1.1.1.9	MapMan:15.3.2.1.2	:	:

Description

No Description!

Coordinates

chr4B:-:132333973..132340441

Molecular Weight (calculated)

46685.2 Da

IEP (calculated)

7.481

GRAVY (calculated)

-0.597

Length

416 amino acids

Sequence
(BLAST)

001: MDIMQTSDSS QYGVVENSPY RFPYNKRVED GNLGASWYFS RKEIEENSLS RRDGISLKKE SFLRKSYCTF LQDLGVRLQV PPVTIATAIV FCHRFFLRQS
101: HAKNDRLTVA TVCMFLAGKV EETPIPLKDV ILISYEIIHK KDPGAVARIK QKEVYEQQKK LILIGERAVL VTLDFDFNVH HPYKPLVEAI KKLKIAQKEL
201: AQVAWSFVND GLCTSLCLQF KPQHIAAGAI FLAAKFLKVK LPADGEKVWW QDFDVTPWQL EEVSNQMMEL YGPPPSQGND SKSSSAGLAN QHALEKAPGA
301: AEEPPAHKNH SASRQPSLPD CHGHNQHDPE RQGSNQRIAQ SEARDGTATS NEGLNTSPSA VDAVEKINKD HQNVAHTVED TEEGGLCHSL EPGSPKRKEH
401: RSHDHSSERD LKRLRP

Best Arabidopsis Sequence Match ( AT4G19560.1 )
(BLAST)

001: MDEALNENAS GSESDASSVA SNLHDDEIIP WFFSREEIER NSPSRRDGID LKTETRLRDS YCTFLEILGE RLKVPQVTIA TAIFFCHRFF LRQSHAKNDR
101: QTIATVCMLL AGKVEETPVT LEDVIIASYE RIHKKDLAGA QRKEVYDQQK ELVLIGEELV LSTLNFDLCI SHPYKPLVEA IKKYMVEDAK TQLAQFAWNF
201: VNDCLRTTLC LQYQPHHIAA GAILLAAELP TVDLQSYREV LCQEFDITPC QLEDIRGQIL ELYERIPTSQ ESKVESSGGV AVVHQPISRD MASTEKCPSS
301: DIEGGSSQVN LSQSDDHSVH DGSRSEGIGE VNSESEAQKN LQDHSVGNIM VEKSDDVGVV QLKKDLQLHQ EEVESKQEKD KKSFEKDITK IDLMDEKDLT
401: ESEVEDEINK TMQTGRQIFM KVEDPDDNMT VEHSEIRNAN NSGVDDELVA DTCLINDSDL

Arabidopsis Description

CYCT1-2Cyclin-T1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q56YF8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.