Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, extracellular, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d027790_P001 | Maize | cytosol | 75.16 | 44.81 |
| HORVU0Hr1G007890.2 | Barley | cytosol, nucleus | 89.44 | 37.8 |
| Zm00001d026030_P014 | Maize | nucleus | 97.52 | 32.04 |
| TraesCS4B01G115800.1 | Wheat | nucleus | 82.61 | 31.97 |
| TraesCS4A01G199600.1 | Wheat | nucleus | 81.99 | 31.73 |
| EES11326 | Sorghum | nucleus | 96.27 | 31.63 |
| Zm00001d020158_P001 | Maize | nucleus | 79.5 | 31.14 |
| TraesCS4A01G199300.1 | Wheat | nucleus | 90.06 | 30.66 |
| HORVU4Hr1G021250.6 | Barley | nucleus | 90.68 | 30.48 |
| TraesCS4D01G113600.1 | Wheat | nucleus | 90.68 | 30.42 |
| TraesCS4B01G116000.1 | Wheat | nucleus | 90.06 | 30.27 |
| HORVU2Hr1G083340.2 | Barley | nucleus | 91.3 | 30.25 |
| HORVU4Hr1G021220.13 | Barley | cytosol | 82.61 | 30.23 |
| TraesCS2B01G358600.1 | Wheat | nucleus | 91.3 | 30.18 |
| TraesCS2A01G323500.1 | Wheat | nucleus | 91.3 | 30.18 |
| TraesCS2D01G339400.1 | Wheat | nucleus | 91.3 | 29.76 |
| AT1G35440.1 | Thale cress | cytosol | 45.34 | 29.55 |
| TraesCS4D01G113400.1 | Wheat | nucleus | 81.37 | 29.5 |
| GSMUA_Achr6P30140_001 | Banana | nucleus | 90.68 | 28.8 |
| CDX71123 | Canola | nucleus | 45.96 | 28.03 |
| GSMUA_Achr6P31620_001 | Banana | cytosol | 88.82 | 27.88 |
| Zm00001d027376_P002 | Maize | nucleus, plastid | 95.03 | 27.42 |
| CDX88692 | Canola | nucleus | 44.1 | 26.89 |
| Bra006723.1-P | Field mustard | nucleus | 44.1 | 26.89 |
| Bra020954.1-P | Field mustard | nucleus | 86.96 | 26.57 |
| CDY09329 | Canola | nucleus | 86.96 | 26.37 |
| CDX76472 | Canola | nucleus | 86.34 | 26.28 |
| CDY26395 | Canola | nucleus | 84.47 | 25.86 |
| KRH50485 | Soybean | nucleus | 90.68 | 25.75 |
| KRG89442 | Soybean | nucleus | 90.68 | 25.7 |
| AT4G19600.1 | Thale cress | nucleus | 86.34 | 25.69 |
| CDX99359 | Canola | nucleus | 85.09 | 25.66 |
| KRG89447 | Soybean | nucleus | 89.44 | 25.4 |
| KRH13708 | Soybean | nucleus | 91.93 | 24.42 |
| Bra021950.1-P | Field mustard | nucleus | 84.47 | 24.33 |
| VIT_00s0125g00270.t01 | Wine grape | nucleus | 88.2 | 24.23 |
| Bra025087.1-P | Field mustard | nucleus | 85.09 | 24.16 |
| KRH43745 | Soybean | nucleus | 91.3 | 24.06 |
| CDY24526 | Canola | cytosol, nucleus, peroxisome | 47.2 | 24.05 |
| CDY54138 | Canola | cytosol | 47.2 | 24.05 |
| CDY65933 | Canola | nucleus | 84.47 | 23.94 |
| VIT_19s0027g01670.t01 | Wine grape | nucleus | 92.55 | 23.92 |
| CDX82583 | Canola | nucleus | 83.85 | 23.81 |
| Bra031514.1-P | Field mustard | cytosol | 46.58 | 23.73 |
| CDY39416 | Canola | nucleus | 85.09 | 23.66 |
| CDX99363 | Canola | nucleus | 59.01 | 23.57 |
| AT5G45190.2 | Thale cress | nucleus | 86.34 | 23.56 |
| CDX78940 | Canola | nucleus | 58.39 | 23.21 |
| Bra013402.1-P | Field mustard | nucleus | 58.39 | 23.21 |
| Solyc10g078180.1.1 | Tomato | nucleus | 88.82 | 23.03 |
| AT4G19560.1 | Thale cress | nucleus | 64.6 | 22.61 |
| Zm00001d033021_P001 | Maize | cytosol | 18.63 | 16.39 |
| Zm00001d019681_P002 | Maize | nucleus | 17.39 | 13.15 |
| Zm00001d015164_P001 | Maize | cytosol | 44.1 | 13.05 |
| Zm00001d021031_P002 | Maize | endoplasmic reticulum, vacuole | 25.47 | 13.02 |
| Zm00001d017392_P009 | Maize | cytosol | 52.17 | 12.8 |
| Zm00001d051291_P003 | Maize | cytosol | 52.8 | 12.63 |
| Zm00001d040936_P002 | Maize | plastid | 22.98 | 11.28 |
| Zm00001d033023_P001 | Maize | cytosol | 14.29 | 9.35 |
| Zm00001d019684_P002 | Maize | mitochondrion | 14.29 | 8.24 |
Protein Annotations
| EnsemblPlants:Zm00001d038497_P001 | EnsemblPlants:Zm00001d038497_T001 | EnsemblPlantsGene:Zm00001d038497 | Gene3D:1.10.472.10 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf |
| InterPro:Cyclin_N | PANTHER:PTHR10026 | PANTHER:PTHR10026:SF103 | PFAM:PF00134 | ProteinID:AQK86762.1 | SUPFAM:SSF47954 |
| UniParc:UPI0008DB352B | UniProt:A0A1D6M6R4 | MapMan:13.1.1.1.9 | : | : | : |
Description
Cyclin-T1-5
Coordinates
chr6:-:158602198..158603012
Molecular Weight (calculated)
18337.6 Da
IEP (calculated)
8.228
GRAVY (calculated)
0.084
Length
161 amino acids
Sequence
(BLAST)
(BLAST)
001: MQTIATVCMF LAGKVEETPR PLKDVILLSY EIIHKKDPAA VQRIKLKEVY EQQKELILLG ERVVLVTLGF DLNVNHPYKP LVEAIKIFKV AQNALAQVAW
101: NFVNDGLRTS LCLQFKPHHI AGGAIFLAAK FLKVKLPSDG EKVWWQEFDV TPWQLEGWSL D
101: NFVNDGLRTS LCLQFKPHHI AGGAIFLAAK FLKVKLPSDG EKVWWQEFDV TPWQLEGWSL D
001: MDEALNENAS GSESDASSVA SNLHDDEIIP WFFSREEIER NSPSRRDGID LKTETRLRDS YCTFLEILGE RLKVPQVTIA TAIFFCHRFF LRQSHAKNDR
101: QTIATVCMLL AGKVEETPVT LEDVIIASYE RIHKKDLAGA QRKEVYDQQK ELVLIGEELV LSTLNFDLCI SHPYKPLVEA IKKYMVEDAK TQLAQFAWNF
201: VNDCLRTTLC LQYQPHHIAA GAILLAAELP TVDLQSYREV LCQEFDITPC QLEDIRGQIL ELYERIPTSQ ESKVESSGGV AVVHQPISRD MASTEKCPSS
301: DIEGGSSQVN LSQSDDHSVH DGSRSEGIGE VNSESEAQKN LQDHSVGNIM VEKSDDVGVV QLKKDLQLHQ EEVESKQEKD KKSFEKDITK IDLMDEKDLT
401: ESEVEDEINK TMQTGRQIFM KVEDPDDNMT VEHSEIRNAN NSGVDDELVA DTCLINDSDL
101: QTIATVCMLL AGKVEETPVT LEDVIIASYE RIHKKDLAGA QRKEVYDQQK ELVLIGEELV LSTLNFDLCI SHPYKPLVEA IKKYMVEDAK TQLAQFAWNF
201: VNDCLRTTLC LQYQPHHIAA GAILLAAELP TVDLQSYREV LCQEFDITPC QLEDIRGQIL ELYERIPTSQ ESKVESSGGV AVVHQPISRD MASTEKCPSS
301: DIEGGSSQVN LSQSDDHSVH DGSRSEGIGE VNSESEAQKN LQDHSVGNIM VEKSDDVGVV QLKKDLQLHQ EEVESKQEKD KKSFEKDITK IDLMDEKDLT
401: ESEVEDEINK TMQTGRQIFM KVEDPDDNMT VEHSEIRNAN NSGVDDELVA DTCLINDSDL
Arabidopsis Description
CYCT1-2Cyclin-T1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q56YF8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.