Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY24526 | Canola | cytosol, nucleus, peroxisome | 91.14 | 91.14 |
| Zm00001d038497_P001 | Maize | cytosol, extracellular, peroxisome | 24.05 | 47.2 |
| CDX99363 | Canola | nucleus | 57.28 | 44.91 |
| Zm00001d027790_P001 | Maize | cytosol | 37.66 | 44.07 |
| CDX78940 | Canola | nucleus | 56.33 | 43.95 |
| AT4G19560.1 | Thale cress | nucleus | 54.75 | 37.61 |
| CDX71123 | Canola | nucleus | 29.11 | 34.85 |
| CDX88692 | Canola | nucleus | 29.11 | 34.85 |
| TraesCS4A01G199600.1 | Wheat | nucleus | 42.72 | 32.45 |
| TraesCS4B01G115800.1 | Wheat | nucleus | 42.41 | 32.21 |
| CDY60279 | Canola | cytosol | 31.65 | 31.95 |
| CDY03933 | Canola | cytosol | 31.01 | 31.31 |
| Zm00001d020158_P001 | Maize | nucleus | 39.87 | 30.66 |
| CDY26395 | Canola | nucleus | 50.63 | 30.42 |
| TraesCS4D01G113400.1 | Wheat | nucleus | 42.72 | 30.41 |
| TraesCS4A01G199300.1 | Wheat | nucleus | 44.62 | 29.81 |
| Zm00001d026030_P014 | Maize | nucleus | 46.2 | 29.8 |
| EES11326 | Sorghum | nucleus | 45.89 | 29.59 |
| TraesCS4B01G116000.1 | Wheat | nucleus | 44.62 | 29.44 |
| TraesCS4D01G113600.1 | Wheat | nucleus | 44.62 | 29.38 |
| TraesCS2A01G323500.1 | Wheat | nucleus | 45.25 | 29.36 |
| HORVU4Hr1G021250.6 | Barley | nucleus | 44.3 | 29.23 |
| HORVU2Hr1G083340.2 | Barley | nucleus | 44.94 | 29.22 |
| TraesCS2B01G358600.1 | Wheat | nucleus | 44.94 | 29.16 |
| CDX76472 | Canola | nucleus | 48.73 | 29.11 |
| GSMUA_Achr6P04070_001 | Banana | nucleus | 44.62 | 29.01 |
| CDY09329 | Canola | nucleus | 48.73 | 29.0 |
| TraesCS2D01G339400.1 | Wheat | nucleus | 45.25 | 28.95 |
| CDX90099 | Canola | nucleus | 29.43 | 28.88 |
| CDY11776 | Canola | cytosol | 29.11 | 28.75 |
| CDX82583 | Canola | nucleus | 50.32 | 28.04 |
| HORVU4Hr1G021220.13 | Barley | cytosol | 38.92 | 27.95 |
| CDY65933 | Canola | nucleus | 50.0 | 27.82 |
| CDX99359 | Canola | nucleus | 46.52 | 27.53 |
| CDY39416 | Canola | nucleus | 50.32 | 27.46 |
| EER88086 | Sorghum | nucleus | 41.14 | 27.31 |
| TraesCS5A01G103900.2 | Wheat | nucleus | 44.3 | 26.62 |
| Zm00001d027376_P002 | Maize | nucleus, plastid | 46.84 | 26.52 |
| KRG89447 | Soybean | nucleus | 47.47 | 26.45 |
| KRH50485 | Soybean | nucleus | 47.47 | 26.45 |
| KRG89442 | Soybean | nucleus | 47.47 | 26.41 |
| Os12t0485400-01 | Rice | nucleus | 45.25 | 26.34 |
| HORVU5Hr1G038970.16 | Barley | nucleus | 45.25 | 26.24 |
| TraesCS5D01G121900.1 | Wheat | nucleus | 44.62 | 25.18 |
| VIT_00s0125g00270.t01 | Wine grape | nucleus | 45.57 | 24.57 |
| HORVU0Hr1G007890.2 | Barley | cytosol, nucleus | 29.43 | 24.41 |
| TraesCS5B01G112100.2 | Wheat | nucleus | 43.99 | 23.88 |
| KXG23456 | Sorghum | nucleus | 42.72 | 22.96 |
| OQU93178 | Sorghum | nucleus | 40.51 | 21.92 |
| CDY51053 | Canola | cytosol | 15.19 | 18.97 |
| CDY69301 | Canola | cytosol | 15.19 | 18.97 |
| CDX85352 | Canola | cytosol | 14.87 | 18.65 |
| CDY51052 | Canola | cytosol | 14.56 | 18.33 |
| CDX86291 | Canola | cytosol | 14.56 | 18.25 |
| CDY03883 | Canola | nucleus | 24.05 | 18.23 |
| CDY66082 | Canola | cytosol | 14.24 | 17.86 |
| CDY51595 | Canola | nucleus | 23.1 | 17.68 |
| CDY05665 | Canola | endoplasmic reticulum, extracellular | 5.7 | 16.51 |
| CDY27590 | Canola | cytosol | 17.72 | 9.0 |
| CDX84949 | Canola | cytosol | 3.8 | 3.42 |
Protein Annotations
| EnsemblPlants:CDY54138 | EnsemblPlantsGene:GSBRNA2T00013427001 | Gene3D:1.10.472.10 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_N |
| PANTHER:PTHR10026 | PANTHER:PTHR10026:SF103 | PFAM:PF00134 | ProteinID:CDY54138 | ProteinID:CDY54138.1 | SMART:SM00385 |
| SUPFAM:SSF47954 | UniParc:UPI0004EF4391 | UniProt:A0A078IYJ5 | MapMan:13.1.1.1.9 | : | : |
Description
BnaC01g43170DBnaC01g43170D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IYJ5]
Coordinates
chrLK033282:+:60107..61509
Molecular Weight (calculated)
35557.0 Da
IEP (calculated)
6.130
GRAVY (calculated)
-0.431
Length
316 amino acids
Sequence
(BLAST)
(BLAST)
001: MFPGEDRWYF SREEIDNNSP SRRDGIDLTE ETRLRKAYCS FLKDLGRRFK LHQATVATAM VFCHRFFLCQ SHAKNDKWII AAVCMFLSAK VESTPVDLKT
101: LIITSEEILH KKVIAAEQRQ GVYEHYKGLV SNGEKLVLST LNFDLSVDLP FDILIQAMKK FILDEATQGK FPSAAWKFVQ DSFWTTLCLQ YQPRHIAAGA
201: FFLAAMHIKM DVKSHGESWC QHFDITLHQL NDIRGQMGEL YHGKKRTPTS TGSIGETSNT GDVVQQQPVP TDNCPSSVIE GGSSSVADGS LQDQSRPEGV
301: EKDSPDREAG DNQEDS
101: LIITSEEILH KKVIAAEQRQ GVYEHYKGLV SNGEKLVLST LNFDLSVDLP FDILIQAMKK FILDEATQGK FPSAAWKFVQ DSFWTTLCLQ YQPRHIAAGA
201: FFLAAMHIKM DVKSHGESWC QHFDITLHQL NDIRGQMGEL YHGKKRTPTS TGSIGETSNT GDVVQQQPVP TDNCPSSVIE GGSSSVADGS LQDQSRPEGV
301: EKDSPDREAG DNQEDS
001: MDEALNENAS GSESDASSVA SNLHDDEIIP WFFSREEIER NSPSRRDGID LKTETRLRDS YCTFLEILGE RLKVPQVTIA TAIFFCHRFF LRQSHAKNDR
101: QTIATVCMLL AGKVEETPVT LEDVIIASYE RIHKKDLAGA QRKEVYDQQK ELVLIGEELV LSTLNFDLCI SHPYKPLVEA IKKYMVEDAK TQLAQFAWNF
201: VNDCLRTTLC LQYQPHHIAA GAILLAAELP TVDLQSYREV LCQEFDITPC QLEDIRGQIL ELYERIPTSQ ESKVESSGGV AVVHQPISRD MASTEKCPSS
301: DIEGGSSQVN LSQSDDHSVH DGSRSEGIGE VNSESEAQKN LQDHSVGNIM VEKSDDVGVV QLKKDLQLHQ EEVESKQEKD KKSFEKDITK IDLMDEKDLT
401: ESEVEDEINK TMQTGRQIFM KVEDPDDNMT VEHSEIRNAN NSGVDDELVA DTCLINDSDL
101: QTIATVCMLL AGKVEETPVT LEDVIIASYE RIHKKDLAGA QRKEVYDQQK ELVLIGEELV LSTLNFDLCI SHPYKPLVEA IKKYMVEDAK TQLAQFAWNF
201: VNDCLRTTLC LQYQPHHIAA GAILLAAELP TVDLQSYREV LCQEFDITPC QLEDIRGQIL ELYERIPTSQ ESKVESSGGV AVVHQPISRD MASTEKCPSS
301: DIEGGSSQVN LSQSDDHSVH DGSRSEGIGE VNSESEAQKN LQDHSVGNIM VEKSDDVGVV QLKKDLQLHQ EEVESKQEKD KKSFEKDITK IDLMDEKDLT
401: ESEVEDEINK TMQTGRQIFM KVEDPDDNMT VEHSEIRNAN NSGVDDELVA DTCLINDSDL
Arabidopsis Description
CYCT1-2Cyclin-T1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q56YF8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.