Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88692 | Canola | nucleus | 92.8 | 92.8 |
| AT1G35440.1 | Thale cress | cytosol | 64.39 | 68.83 |
| Zm00001d038497_P001 | Maize | cytosol, extracellular, peroxisome | 28.03 | 45.96 |
| Zm00001d027790_P001 | Maize | cytosol | 43.56 | 42.59 |
| CDY03933 | Canola | cytosol | 36.74 | 30.99 |
| CDY60279 | Canola | cytosol | 36.36 | 30.67 |
| CDY24526 | Canola | cytosol, nucleus, peroxisome | 35.98 | 30.06 |
| CDY11776 | Canola | cytosol | 36.36 | 30.0 |
| Zm00001d020158_P001 | Maize | nucleus | 46.21 | 29.68 |
| TraesCS4B01G115800.1 | Wheat | nucleus | 46.59 | 29.57 |
| TraesCS4A01G199600.1 | Wheat | nucleus | 46.59 | 29.57 |
| CDX90099 | Canola | nucleus | 35.98 | 29.5 |
| CDY54138 | Canola | cytosol | 34.85 | 29.11 |
| TraesCS4A01G199300.1 | Wheat | nucleus | 50.76 | 28.33 |
| TraesCS4D01G113400.1 | Wheat | nucleus | 46.97 | 27.93 |
| TraesCS4D01G113600.1 | Wheat | nucleus | 50.76 | 27.92 |
| CDX99363 | Canola | nucleus | 42.42 | 27.79 |
| Zm00001d026030_P014 | Maize | nucleus | 51.52 | 27.76 |
| HORVU2Hr1G083340.2 | Barley | nucleus | 50.76 | 27.57 |
| TraesCS4B01G116000.1 | Wheat | nucleus | 50.0 | 27.56 |
| HORVU4Hr1G021250.6 | Barley | nucleus | 50.0 | 27.56 |
| EES11326 | Sorghum | nucleus | 51.14 | 27.55 |
| TraesCS2A01G323500.1 | Wheat | nucleus | 50.76 | 27.52 |
| EER88086 | Sorghum | nucleus | 49.24 | 27.31 |
| TraesCS2B01G358600.1 | Wheat | nucleus | 50.38 | 27.31 |
| TraesCS2D01G339400.1 | Wheat | nucleus | 50.76 | 27.13 |
| HORVU4Hr1G021220.13 | Barley | cytosol | 45.08 | 27.05 |
| CDX78940 | Canola | nucleus | 41.29 | 26.91 |
| CDX76472 | Canola | nucleus | 50.38 | 25.14 |
| GSMUA_Achr6P04070_001 | Banana | nucleus | 46.21 | 25.1 |
| CDY09329 | Canola | nucleus | 50.38 | 25.05 |
| TraesCS5A01G103900.2 | Wheat | nucleus | 49.62 | 24.9 |
| CDY26395 | Canola | nucleus | 49.62 | 24.9 |
| Os12t0485400-01 | Rice | nucleus | 50.76 | 24.68 |
| Zm00001d027376_P002 | Maize | nucleus, plastid | 50.76 | 24.01 |
| CDX99359 | Canola | nucleus | 48.48 | 23.97 |
| HORVU5Hr1G038970.16 | Barley | nucleus | 49.24 | 23.85 |
| KRH50485 | Soybean | nucleus | 50.76 | 23.63 |
| KRG89442 | Soybean | nucleus | 50.76 | 23.59 |
| TraesCS5D01G121900.1 | Wheat | nucleus | 50.0 | 23.57 |
| KRG89447 | Soybean | nucleus | 50.38 | 23.46 |
| HORVU0Hr1G007890.2 | Barley | cytosol, nucleus | 33.71 | 23.36 |
| CDY65933 | Canola | nucleus | 49.62 | 23.06 |
| CDY05665 | Canola | endoplasmic reticulum, extracellular | 9.47 | 22.94 |
| CDY69301 | Canola | cytosol | 21.97 | 22.92 |
| CDY51053 | Canola | cytosol | 21.97 | 22.92 |
| VIT_00s0125g00270.t01 | Wine grape | nucleus | 50.76 | 22.87 |
| CDX82583 | Canola | nucleus | 48.48 | 22.57 |
| CDY39416 | Canola | nucleus | 49.24 | 22.45 |
| TraesCS5B01G112100.2 | Wheat | nucleus | 49.24 | 22.34 |
| CDY51052 | Canola | cytosol | 21.21 | 22.31 |
| CDX85352 | Canola | cytosol | 20.83 | 21.83 |
| CDY66082 | Canola | cytosol | 20.83 | 21.83 |
| KXG23456 | Sorghum | nucleus | 48.48 | 21.77 |
| CDX86291 | Canola | cytosol | 20.45 | 21.43 |
| OQU93178 | Sorghum | nucleus | 47.35 | 21.4 |
| CDY51595 | Canola | nucleus | 28.41 | 18.16 |
| CDY03883 | Canola | nucleus | 28.41 | 17.99 |
| CDY27590 | Canola | cytosol | 21.97 | 9.32 |
| CDX84949 | Canola | cytosol | 7.2 | 5.41 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.9 | GO:A0A078C800 | EnsemblPlants:CDX71123 | ProteinID:CDX71123 | ProteinID:CDX71123.1 |
| InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSBRNA2T00141084001 | PFAM:PF00134 | PFAM:PF02984 | PANTHER:PTHR10026 |
| PANTHER:PTHR10026:SF103 | SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | UniParc:UPI0004EEA7A2 | : |
Description
BnaC03g12070D
Coordinates
chrLK031791:+:3766221..3767015
Molecular Weight (calculated)
30255.4 Da
IEP (calculated)
8.473
GRAVY (calculated)
-0.391
Length
264 amino acids
Sequence
(BLAST)
(BLAST)
001: MGETSWYKTR EEIEVKSPSR VDGIDSKQES FQRWSYSTFL QELGQRLNNP QRSIATSIVL CQRFFTLQSL AKNDPKTISI ICMFIAGKVE GSPRPVDDVI
101: AKGYRVLHGK EPTTEVCARL KGAVLTGEKF VLSTLRFDLE IEHPYEPALD WVRRSVKVEM DAKRLFQAAW NFLNDGLRSS LCLQFRPSQI AAAAIYLGSR
201: MTNVKIPCDG EKDWWLEFHV TKRQMCEICN QTLEIYQQDF LIPVKHEAKS KFGDGGLLRP EQGR
101: AKGYRVLHGK EPTTEVCARL KGAVLTGEKF VLSTLRFDLE IEHPYEPALD WVRRSVKVEM DAKRLFQAAW NFLNDGLRSS LCLQFRPSQI AAAAIYLGSR
201: MTNVKIPCDG EKDWWLEFHV TKRQMCEICN QTLEIYQQDF LIPVKHEAKS KFGDGGLLRP EQGR
001: MAETKNWYNT REAIEKTSPS RLDGINLKEE TFQRWSYTSF LQELGQRLNN PQKTIATAIV LCQRFFTRQS LTKNDPKTVA IICMFIAGKV EGSPRPAGDV
101: VFVSYRVLFN KEPLRDVFER LKMTVLTGEK LVLSTLECDL EIEHPYKLVM DWVKRSVKTE DGRRLCQAAF NFVNDSLRTS LCLQFGPSQI ASAAIYIGLS
201: MCKMTLPCDG DKAWWREFDV TKRQLWEICD QMLDLYVQDF VVPRHGL
101: VFVSYRVLFN KEPLRDVFER LKMTVLTGEK LVLSTLECDL EIEHPYKLVM DWVKRSVKTE DGRRLCQAAF NFVNDSLRTS LCLQFGPSQI ASAAIYIGLS
201: MCKMTLPCDG DKAWWREFDV TKRQLWEICD QMLDLYVQDF VVPRHGL
Arabidopsis Description
CYCT1-1Putative cyclin-T1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8P7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.