CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021950.1-P	Field mustard	nucleus	99.24	93.38
CDY65933	Canola	nucleus	95.44	88.38
Zm00001d038497_P001	Maize	cytosol, extracellular, peroxisome	25.86	84.47
CDX82583	Canola	nucleus	87.64	81.31
CDY39416	Canola	nucleus	87.64	79.62
AT5G45190.2	Thale cress	nucleus	88.59	78.98
CDX76472	Canola	nucleus	74.33	73.91
CDY09329	Canola	nucleus	74.14	73.45
CDX99359	Canola	nucleus	73.0	71.91
Zm00001d027790_P001	Maize	cytosol	34.79	67.78
TraesCS4A01G199300.1	Wheat	nucleus	52.28	58.14
EES11326	Sorghum	nucleus	53.99	57.96
Zm00001d026030_P014	Maize	nucleus	53.42	57.35
TraesCS4D01G113600.1	Wheat	nucleus	52.28	57.29
HORVU4Hr1G021250.6	Barley	nucleus	52.09	57.2
TraesCS4B01G116000.1	Wheat	nucleus	51.9	56.99
HORVU2Hr1G083340.2	Barley	nucleus	52.09	56.38
TraesCS2A01G323500.1	Wheat	nucleus	51.9	56.06
TraesCS2B01G358600.1	Wheat	nucleus	51.71	55.85
KRH50485	Soybean	nucleus	60.08	55.73
TraesCS2D01G339400.1	Wheat	nucleus	52.09	55.47
HORVU0Hr1G007890.2	Barley	cytosol, nucleus	39.92	55.12
KRG89442	Soybean	nucleus	59.51	55.11
Zm00001d020158_P001	Maize	nucleus	42.78	54.74
KRG89447	Soybean	nucleus	58.56	54.32
TraesCS4A01G199600.1	Wheat	nucleus	42.78	54.09
TraesCS4B01G115800.1	Wheat	nucleus	42.78	54.09
EER88086	Sorghum	nucleus	48.67	53.78
VIT_00s0125g00270.t01	Wine grape	nucleus	58.75	52.73
TraesCS4D01G113400.1	Wheat	nucleus	44.49	52.7
CDX99363	Canola	nucleus	39.92	52.11
Zm00001d027376_P002	Maize	nucleus, plastid	53.8	50.72
Os12t0485400-01	Rice	nucleus	52.28	50.64
CDY54138	Canola	cytosol	30.42	50.63
CDX78940	Canola	nucleus	38.97	50.62
GSMUA_Achr6P04070_001	Banana	nucleus	46.77	50.62
TraesCS5A01G103900.2	Wheat	nucleus	50.38	50.38
CDY24526	Canola	cytosol, nucleus, peroxisome	30.04	50.0
HORVU5Hr1G038970.16	Barley	nucleus	51.71	49.91
CDX71123	Canola	nucleus	24.9	49.62
TraesCS5D01G121900.1	Wheat	nucleus	52.28	49.11
CDX88692	Canola	nucleus	24.52	48.86
TraesCS5B01G112100.2	Wheat	nucleus	53.04	47.94
HORVU4Hr1G021220.13	Barley	cytosol	37.26	44.55
CDY03933	Canola	cytosol	26.05	43.77
CDY60279	Canola	cytosol	26.05	43.77
OQU93178	Sorghum	nucleus	47.91	43.15
KXG23456	Sorghum	nucleus	45.44	40.65
CDY11776	Canola	cytosol	24.33	40.0
CDX90099	Canola	nucleus	24.33	39.75
CDX86291	Canola	cytosol	12.36	25.79
CDX85352	Canola	cytosol	12.17	25.4
CDY66082	Canola	cytosol	12.17	25.4
CDY51052	Canola	cytosol	11.98	25.1
CDY03883	Canola	nucleus	19.2	24.22
CDY51595	Canola	nucleus	19.01	24.21
CDY51053	Canola	cytosol	11.6	24.11
CDY69301	Canola	cytosol	11.6	24.11
CDY05665	Canola	endoplasmic reticulum, extracellular	4.56	22.02
CDY27590	Canola	cytosol	14.26	12.06
CDX84949	Canola	cytosol	5.51	8.26

Protein Annotations

EnsemblPlants:CDY26395	EnsemblPlantsGene:GSBRNA2T00035168001	Gene3D:1.10.472.10	GO:A0A078GIS4	InterPro:Cyclin-like	InterPro:Cyclin-like_sf
InterPro:Cyclin_N	ncoils:Coil	PANTHER:PTHR10026	PANTHER:PTHR10026:SF103	PFAM:PF00134	PIRSF:PIRSF036580
ProteinID:CDY26395	ProteinID:CDY26395.1	SEG:seg	SMART:SM00385	SUPFAM:SSF47954	UniParc:UPI0004EE2D80
UniProt:A0A078GIS4	MapMan:13.1.1.1.9	MapMan:15.3.2.1.2	:	:	:

Description

BnaA02g23750DBnaA02g23750D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GIS4]

Coordinates

chrLK032189:+:434913..437908

Molecular Weight (calculated)

58908.4 Da

IEP (calculated)

7.538

GRAVY (calculated)

-0.817

Length

526 amino acids

Sequence
(BLAST)

001: MAGVLAGECS YGESGVSSHS RNSHEKQDEL SRWYFGRKEI EENSPSRLDG IDLKKETYLR KSYCTFLQDL GMRLKVPQVT IATAIIFCHR FFFRQSHAKN
101: DRRTIATVCM FLAGKVEETP RPLNNVISVS YEIINKKDPG AAQKIKQKEV YEQQKELILN GEKIVLSTLG FDLNVLHPYK PLVEAIKKFK VAQNALAQVA
201: WNFVNDGLRT SLCLQFQPHH IAAGAIFLAA KFLKVKLPSD GEKVWWQEFD VTPRQLEDVS NQMLELYEQN RVPASQGSEV ESSVGGGSAH RPGSRNATST
301: DEHVGSRQAS ARSSHEPSNS DNHGGSSKGG LDQNNGNGDV EAVNASVDHK EEVKREREES LHPTANSRPL VEGAGKDNSE RESGELPDDV HKSRNVETGV
401: VAPIGQSPKD LKMLRDKVLK AKREKAKKLL GERTMKKDLM DEDDFIEREL EDVELAVEDE NAKQKNVPKA ENSDLMGTEH GAVKNAEEGE MVNDVSQMMH
501: SRKRKMGSPP EKQSEGKRRH KHRRHS

Best Arabidopsis Sequence Match ( AT5G45190.1 )
(BLAST)

001: MAGVLAGECS YSESGVSSHS RNSHEKQEEV SRWYFGRKEI EENSPSRLDG IDLKKETYLR KSYCTFLQDL GMRLKVPQVT IATAIIFCHR FFFRQSHAKN
101: DRRTIATVCM FLAGKVEETP RPLKDVIFVS YEIINKKDPG ASQKIKQKEV YEQQKELILN GEKIVLSTLG FDLNVYHPYK PLVEAIKKFK VAQNALAQVA
201: WNFVNDGLRT SLCLQFKPHH IAAGAIFLAA KFLKVKLPSD GEKVWWQEFD VTPRQLEDVS NQMLELYEQN RVPASQGSEV ESSVGGGSAQ RPGSRNAVST
301: DEHVGSRQTS SVRSTHEQSN SDNHGGSSKG VLNQNNENGG GEAANVSVDN KEEIERETKE SSLHLESHPA HKDNVREAPH NSRPLVEGPG KDNSEREGGE
401: LQDDGAVHKS RNVDVGDALI SQSPKDLKLL RDKVKAKREK AKKLLGERTR KKDLMDEDDL IERELEDVQL AVEDEKTKER KVQSRPKAEN SDLMGTEHGE
501: ILDVKGEVKN TEEGEMVNNN VSPMMHSRKR KMGSPPEKQS EGKRRHNSEN GEESHKTSRG SSHHGDREHR RHSQENNHS

Arabidopsis Description

Cyclin family protein [Source:UniProtKB/TrEMBL;Acc:F4KD43]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.