Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G116000.1 | Wheat | nucleus | 98.31 | 97.08 |
| TraesCS4D01G113600.1 | Wheat | nucleus | 98.31 | 96.88 |
| HORVU4Hr1G021250.6 | Barley | nucleus | 95.77 | 94.57 |
| HORVU0Hr1G007890.2 | Barley | cytosol, nucleus | 74.21 | 92.13 |
| Zm00001d038497_P001 | Maize | cytosol, extracellular, peroxisome | 30.66 | 90.06 |
| TraesCS2A01G323500.1 | Wheat | nucleus | 85.84 | 83.37 |
| EES11326 | Sorghum | nucleus | 84.78 | 81.84 |
| Zm00001d026030_P014 | Maize | nucleus | 83.72 | 80.82 |
| TraesCS4A01G199600.1 | Wheat | nucleus | 64.69 | 73.56 |
| EER88086 | Sorghum | nucleus | 74.0 | 73.53 |
| Zm00001d027376_P002 | Maize | nucleus, plastid | 81.82 | 69.35 |
| GSMUA_Achr6P30140_001 | Banana | nucleus | 69.98 | 65.29 |
| GSMUA_Achr6P31620_001 | Banana | cytosol | 63.42 | 58.48 |
| TraesCS5A01G103900.2 | Wheat | nucleus | 63.64 | 57.22 |
| KRH50485 | Soybean | nucleus | 63.64 | 53.09 |
| KRG89442 | Soybean | nucleus | 63.21 | 52.64 |
| CDY26395 | Canola | nucleus | 58.14 | 52.28 |
| AT1G35440.1 | Thale cress | cytosol | 27.27 | 52.23 |
| VIT_19s0027g01670.t01 | Wine grape | nucleus | 68.5 | 52.01 |
| KRG89447 | Soybean | nucleus | 62.16 | 51.85 |
| Bra020954.1-P | Field mustard | nucleus | 57.72 | 51.8 |
| CDX76472 | Canola | nucleus | 57.51 | 51.42 |
| VIT_00s0125g00270.t01 | Wine grape | nucleus | 63.64 | 51.37 |
| CDY09329 | Canola | nucleus | 57.51 | 51.22 |
| KRH13708 | Soybean | nucleus | 65.33 | 50.99 |
| CDX71123 | Canola | nucleus | 28.33 | 50.76 |
| AT4G19600.1 | Thale cress | nucleus | 57.93 | 50.65 |
| KRH43745 | Soybean | nucleus | 65.12 | 50.41 |
| CDX99359 | Canola | nucleus | 56.24 | 49.81 |
| Bra021950.1-P | Field mustard | nucleus | 58.56 | 49.55 |
| Bra025087.1-P | Field mustard | nucleus | 59.2 | 49.38 |
| CDX88692 | Canola | nucleus | 27.27 | 48.86 |
| CDY65933 | Canola | nucleus | 58.35 | 48.59 |
| Bra006723.1-P | Field mustard | nucleus | 27.06 | 48.48 |
| Solyc10g078180.1.1 | Tomato | nucleus | 63.64 | 48.47 |
| CDY39416 | Canola | nucleus | 59.2 | 48.36 |
| CDX82583 | Canola | nucleus | 57.93 | 48.32 |
| AT5G45190.2 | Thale cress | nucleus | 59.41 | 47.63 |
| CDX99363 | Canola | nucleus | 39.32 | 46.15 |
| Bra013402.1-P | Field mustard | nucleus | 39.11 | 45.68 |
| CDX78940 | Canola | nucleus | 39.11 | 45.68 |
| CDY24526 | Canola | cytosol, nucleus, peroxisome | 30.44 | 45.57 |
| Bra031514.1-P | Field mustard | cytosol | 29.81 | 44.62 |
| CDY54138 | Canola | cytosol | 29.81 | 44.62 |
| AT4G19560.1 | Thale cress | nucleus | 42.71 | 43.91 |
| TraesCS3A01G196600.1 | Wheat | nucleus | 21.78 | 28.93 |
| TraesCS5A01G057600.1 | Wheat | mitochondrion | 11.84 | 27.86 |
| TraesCS5A01G282200.1 | Wheat | peroxisome | 14.38 | 26.36 |
| TraesCS6A01G349600.1 | Wheat | peroxisome | 13.95 | 25.68 |
| TraesCS6A01G331500.1 | Wheat | nucleus | 20.93 | 24.03 |
| TraesCS6A01G096600.1 | Wheat | nucleus | 30.87 | 20.71 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G199300.1 | EnsemblPlantsGene:TraesCS4A01G199300 | Gene3D:1.10.472.10 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_N |
| PANTHER:PTHR10026 | PANTHER:PTHR10026:SF103 | PFAM:PF00134 | PIRSF:PIRSF036580 | SMART:SM00385 | SUPFAM:SSF47954 |
| TIGR:cd00043 | MapMan:13.1.1.1.9 | MapMan:15.3.2.1.2 | : | : | : |
Description
No Description!
Coordinates
chr4A:+:486638806..486643365
Molecular Weight (calculated)
53706.7 Da
IEP (calculated)
8.316
GRAVY (calculated)
-0.737
Length
473 amino acids
Sequence
(BLAST)
(BLAST)
001: MDIMQTSDSS HHGIVENSPY RTPYGRHVES GNLGGSWYFS RKEIEENSLS RKDGIDLKKE SYLRKSYCTF LQDFGMRLKV PQVTIATAIV FCHRFFLRQS
101: HAKNDRLTIA TVCMFLAGKV EETPRPIKDV VLISYEIIHK KDPAAVARIK QKEVYEQQKE LILIGERAVL ITLGFDLNVH HPYKPLVEAI KKFKVAQNAL
201: AQVAWNFVND GLRTSLCLQF KPNHITAGAI FLAAKFLKVK LPSDGEKVWW QEFDVTPRQL EEVSNQMLEL YEQNRVVPPP SQGNDTEGSS ASVVNPRAVG
301: KAPGAADERH AHGNHQAPQQ SSMVGPPEKQ NSNQRIPKVE AKDGIASSNE GPNMSSSMDA MKKIDKDKVK AALEKRRKSK GDAGRKVDIM DDDDLIEREL
401: EHGVEMAVKD EKKHDRRQSW PQPPHQNAEE GELSMDSQEY LSTVTELDDR KRKDVYDHRS YDHGERDLKR VRS
101: HAKNDRLTIA TVCMFLAGKV EETPRPIKDV VLISYEIIHK KDPAAVARIK QKEVYEQQKE LILIGERAVL ITLGFDLNVH HPYKPLVEAI KKFKVAQNAL
201: AQVAWNFVND GLRTSLCLQF KPNHITAGAI FLAAKFLKVK LPSDGEKVWW QEFDVTPRQL EEVSNQMLEL YEQNRVVPPP SQGNDTEGSS ASVVNPRAVG
301: KAPGAADERH AHGNHQAPQQ SSMVGPPEKQ NSNQRIPKVE AKDGIASSNE GPNMSSSMDA MKKIDKDKVK AALEKRRKSK GDAGRKVDIM DDDDLIEREL
401: EHGVEMAVKD EKKHDRRQSW PQPPHQNAEE GELSMDSQEY LSTVTELDDR KRKDVYDHRS YDHGERDLKR VRS
001: MDEALNENAS GSESDASSVA SNLHDDEIIP WFFSREEIER NSPSRRDGID LKTETRLRDS YCTFLEILGE RLKVPQVTIA TAIFFCHRFF LRQSHAKNDR
101: QTIATVCMLL AGKVEETPVT LEDVIIASYE RIHKKDLAGA QRKEVYDQQK ELVLIGEELV LSTLNFDLCI SHPYKPLVEA IKKYMVEDAK TQLAQFAWNF
201: VNDCLRTTLC LQYQPHHIAA GAILLAAELP TVDLQSYREV LCQEFDITPC QLEDIRGQIL ELYERIPTSQ ESKVESSGGV AVVHQPISRD MASTEKCPSS
301: DIEGGSSQVN LSQSDDHSVH DGSRSEGIGE VNSESEAQKN LQDHSVGNIM VEKSDDVGVV QLKKDLQLHQ EEVESKQEKD KKSFEKDITK IDLMDEKDLT
401: ESEVEDEINK TMQTGRQIFM KVEDPDDNMT VEHSEIRNAN NSGVDDELVA DTCLINDSDL
101: QTIATVCMLL AGKVEETPVT LEDVIIASYE RIHKKDLAGA QRKEVYDQQK ELVLIGEELV LSTLNFDLCI SHPYKPLVEA IKKYMVEDAK TQLAQFAWNF
201: VNDCLRTTLC LQYQPHHIAA GAILLAAELP TVDLQSYREV LCQEFDITPC QLEDIRGQIL ELYERIPTSQ ESKVESSGGV AVVHQPISRD MASTEKCPSS
301: DIEGGSSQVN LSQSDDHSVH DGSRSEGIGE VNSESEAQKN LQDHSVGNIM VEKSDDVGVV QLKKDLQLHQ EEVESKQEKD KKSFEKDITK IDLMDEKDLT
401: ESEVEDEINK TMQTGRQIFM KVEDPDDNMT VEHSEIRNAN NSGVDDELVA DTCLINDSDL
Arabidopsis Description
CYCT1-2Cyclin-T1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q56YF8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.