Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d038497_P001 | Maize | cytosol, extracellular, peroxisome | 25.69 | 86.34 |
| CDX76472 | Canola | nucleus | 83.18 | 85.07 |
| CDY09329 | Canola | nucleus | 83.36 | 84.93 |
| Bra020954.1-P | Field mustard | nucleus | 82.44 | 84.63 |
| CDX99359 | Canola | nucleus | 83.36 | 84.46 |
| AT5G45190.2 | Thale cress | nucleus | 79.11 | 72.54 |
| Zm00001d027790_P001 | Maize | cytosol | 33.64 | 67.41 |
| Zm00001d026030_P014 | Maize | nucleus | 52.87 | 58.37 |
| EES11326 | Sorghum | nucleus | 52.87 | 58.37 |
| TraesCS4A01G199300.1 | Wheat | nucleus | 50.65 | 57.93 |
| HORVU4Hr1G021250.6 | Barley | nucleus | 50.83 | 57.41 |
| TraesCS4D01G113600.1 | Wheat | nucleus | 50.65 | 57.08 |
| TraesCS4B01G116000.1 | Wheat | nucleus | 50.46 | 56.99 |
| HORVU2Hr1G083340.2 | Barley | nucleus | 51.02 | 56.79 |
| TraesCS2A01G323500.1 | Wheat | nucleus | 51.02 | 56.67 |
| Zm00001d020158_P001 | Maize | nucleus | 42.88 | 56.45 |
| TraesCS2B01G358600.1 | Wheat | nucleus | 50.65 | 56.26 |
| TraesCS2D01G339400.1 | Wheat | nucleus | 51.02 | 55.87 |
| KRH50485 | Soybean | nucleus | 58.41 | 55.73 |
| HORVU0Hr1G007890.2 | Barley | cytosol, nucleus | 39.0 | 55.38 |
| TraesCS4A01G199600.1 | Wheat | nucleus | 42.14 | 54.81 |
| KRG89442 | Soybean | nucleus | 57.49 | 54.75 |
| TraesCS4B01G115800.1 | Wheat | nucleus | 41.96 | 54.57 |
| KRG89447 | Soybean | nucleus | 56.56 | 53.97 |
| VIT_00s0125g00270.t01 | Wine grape | nucleus | 57.86 | 53.41 |
| EER88086 | Sorghum | nucleus | 46.77 | 53.15 |
| TraesCS4D01G113400.1 | Wheat | nucleus | 43.44 | 52.93 |
| AT1G35440.1 | Thale cress | cytosol | 24.03 | 52.63 |
| TraesCS5A01G103900.2 | Wheat | nucleus | 50.28 | 51.71 |
| GSMUA_Achr6P04070_001 | Banana | nucleus | 46.21 | 51.44 |
| Zm00001d027376_P002 | Maize | nucleus, plastid | 53.05 | 51.43 |
| Os12t0485400-01 | Rice | nucleus | 51.57 | 51.38 |
| HORVU5Hr1G038970.16 | Barley | nucleus | 51.2 | 50.83 |
| TraesCS5D01G121900.1 | Wheat | nucleus | 51.76 | 50.0 |
| TraesCS5B01G112100.2 | Wheat | nucleus | 52.5 | 48.8 |
| AT4G19560.1 | Thale cress | nucleus | 40.48 | 47.61 |
| HORVU4Hr1G021220.13 | Barley | cytosol | 36.6 | 45.0 |
| OQU93178 | Sorghum | nucleus | 46.4 | 42.98 |
| AT1G27630.1 | Thale cress | cytosol | 23.84 | 40.69 |
| KXG23456 | Sorghum | nucleus | 43.81 | 40.31 |
| AT2G26430.1 | Thale cress | cytosol | 18.11 | 23.56 |
| AT5G48640.1 | Thale cress | cytosol | 10.72 | 22.92 |
| AT5G48630.2 | Thale cress | cytosol, nucleus, plastid | 10.54 | 22.27 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.9 | MapMan:15.3.2.1.2 | EntrezGene:827702 | UniProt:A0A178UUL8 | ProteinID:AEE84203.1 |
| EMBL:AK117509 | ArrayExpress:AT4G19600 | EnsemblPlantsGene:AT4G19600 | RefSeq:AT4G19600 | TAIR:AT4G19600 | RefSeq:AT4G19600-TAIR-G |
| EnsemblPlants:AT4G19600.1 | TAIR:AT4G19600.1 | Unigene:At.32800 | EMBL:BT029301 | ProteinID:CAB40377.1 | ProteinID:CAB78962.1 |
| Symbol:CYCT1;4 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_N | GO:GO:0000307 | GO:GO:0003674 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006464 |
| GO:GO:0007049 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009605 |
| GO:GO:0009607 | GO:GO:0009615 | GO:GO:0009653 | GO:GO:0009987 | GO:GO:0010090 | GO:GO:0016043 |
| GO:GO:0016538 | GO:GO:0019538 | GO:GO:0030154 | GO:GO:0030234 | GO:GO:0045737 | GO:GO:0045944 |
| GO:GO:0048366 | GO:GO:0051301 | GO:GO:1901409 | RefSeq:NP_193695.2 | ProteinID:OAO97220.1 | PFAM:PF00134 |
| PIRSF:PIRSF036580 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| PANTHER:PTHR10026 | PANTHER:PTHR10026:SF103 | UniProt:Q8GYM6 | SMART:SM00385 | SUPFAM:SSF47954 | UniParc:UPI00000ADDAF |
| SEG:seg | : | : | : | : | : |
Description
CYCT1-4Cyclin-T1-4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GYM6]
Coordinates
chr4:+:10672765..10676929
Molecular Weight (calculated)
60713.1 Da
IEP (calculated)
6.520
GRAVY (calculated)
-0.813
Length
541 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGVLAGDCS FGESGVSSYS RNSNEKQDEV ARWYFGRKEI EENSPSRLDS IDLKKETYLR KSYCTFLQDL GMRLKVPQVT IATAIIFCHR FFIRQSHARN
101: DRRTIATVCM FLAGKVEETP RPLKDVIVVS YEIIHKKDPT TAQKIKQKEV YEQQKELILN GEKIVLSTLG FDFNVYHPYK PLVEAIKKFK VAQNALAQVA
201: WNFVNDGLRT SLCLQFKPHH IAAGAIFLAA KFLKVKLPSD GEKVWWQEFD VTPRQLEDVS NQMLELYEQN RVPASQVSEV ESSVGGGSAH HVGSRPSARL
301: THEHSNSDNL GGSTKATQNR SNDNGSGEAG SVITEQKGER DTETKDSMHT ESHPAHKSRS GVEAPGEDKI EKAGAHFPED DKSRIVGTAD VTVSQSPKDI
401: KMFRDKVKAK LEAKKVQGEK TRKKDLVDED DLIERELEDV ELAVEDDKDI QNKSSMGTEH GEILDGNNLV VNTEEGEMID DVSSTMPSRK RKMESPCEKQ
501: LGEGKRRHDN SENVEEGQKT NPGGSSHSYG DREPRRHSQE R
101: DRRTIATVCM FLAGKVEETP RPLKDVIVVS YEIIHKKDPT TAQKIKQKEV YEQQKELILN GEKIVLSTLG FDFNVYHPYK PLVEAIKKFK VAQNALAQVA
201: WNFVNDGLRT SLCLQFKPHH IAAGAIFLAA KFLKVKLPSD GEKVWWQEFD VTPRQLEDVS NQMLELYEQN RVPASQVSEV ESSVGGGSAH HVGSRPSARL
301: THEHSNSDNL GGSTKATQNR SNDNGSGEAG SVITEQKGER DTETKDSMHT ESHPAHKSRS GVEAPGEDKI EKAGAHFPED DKSRIVGTAD VTVSQSPKDI
401: KMFRDKVKAK LEAKKVQGEK TRKKDLVDED DLIERELEDV ELAVEDDKDI QNKSSMGTEH GEILDGNNLV VNTEEGEMID DVSSTMPSRK RKMESPCEKQ
501: LGEGKRRHDN SENVEEGQKT NPGGSSHSYG DREPRRHSQE R
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.