Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra030056.1-P | Field mustard | cytosol | 87.7 | 88.82 |
| CDY03933 | Canola | cytosol | 87.38 | 88.5 |
| CDY60279 | Canola | cytosol | 87.07 | 88.18 |
| Bra010927.1-P | Field mustard | nucleus | 88.64 | 87.81 |
| CDX90099 | Canola | nucleus | 88.96 | 87.58 |
| CDY11776 | Canola | cytosol | 88.33 | 87.5 |
| AT1G35440.1 | Thale cress | cytosol | 30.6 | 39.27 |
| Solyc07g032480.2.1 | Tomato | nucleus | 42.27 | 32.45 |
| VIT_18s0001g12980.t01 | Wine grape | nucleus | 44.48 | 31.9 |
| PGSC0003DMT400044127 | Potato | nucleus | 41.96 | 31.37 |
| GSMUA_Achr8P18640_001 | Banana | nucleus | 40.06 | 30.68 |
| GSMUA_Achr3P20770_001 | Banana | nucleus | 39.12 | 29.67 |
| Os02t0133000-00 | Rice | extracellular | 38.17 | 27.13 |
| AT4G19560.1 | Thale cress | nucleus | 38.8 | 26.74 |
| AT4G19600.1 | Thale cress | nucleus | 40.69 | 23.84 |
| AT5G45190.2 | Thale cress | nucleus | 42.27 | 22.71 |
| KXG29406 | Sorghum | cytosol | 38.49 | 22.06 |
| Zm00001d015164_P001 | Maize | cytosol | 37.54 | 21.88 |
| AT5G48640.1 | Thale cress | cytosol | 16.09 | 20.16 |
| AT5G48630.2 | Thale cress | cytosol, nucleus, plastid | 16.09 | 19.92 |
| Os02t0438200-01 | Rice | nucleus | 36.59 | 18.41 |
| Zm00001d017392_P009 | Maize | cytosol | 37.22 | 17.99 |
| Zm00001d051291_P003 | Maize | cytosol | 36.91 | 17.38 |
| AT2G26430.1 | Thale cress | cytosol | 22.71 | 17.31 |
| EES07541 | Sorghum | plastid | 37.22 | 16.93 |
| TraesCS6A01G096600.1 | Wheat | nucleus | 36.59 | 16.45 |
| TraesCS6B01G125000.1 | Wheat | nucleus | 36.59 | 15.38 |
| TraesCS6D01G087700.1 | Wheat | nucleus | 35.96 | 13.64 |
| HORVU6Hr1G017740.2 | Barley | nucleus | 29.34 | 10.23 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.9 | EntrezGene:839655 | ProteinID:AAD46000.1 | ProteinID:AAF24941.1 | ProteinID:AAF24942.1 |
| ProteinID:AEE30856.1 | EMBL:AF344323 | EMBL:AK117692 | EMBL:AK229729 | ArrayExpress:AT1G27630 | EnsemblPlantsGene:AT1G27630 |
| RefSeq:AT1G27630 | TAIR:AT1G27630 | RefSeq:AT1G27630-TAIR-G | EnsemblPlants:AT1G27630.1 | TAIR:AT1G27630.1 | EMBL:AY062805 |
| EMBL:AY081601 | EMBL:AY087303 | Unigene:At.11523 | Symbol:CYCT1;3 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf |
| InterPro:Cyclin_N | GO:GO:0000307 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006464 | GO:GO:0007049 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016538 | GO:GO:0019538 |
| GO:GO:0030234 | GO:GO:0045737 | GO:GO:0045944 | GO:GO:0051301 | GO:GO:1901409 | RefSeq:NP_001321314.1 |
| RefSeq:NP_001321315.1 | RefSeq:NP_001321317.1 | RefSeq:NP_001321318.1 | RefSeq:NP_174084.1 | PFAM:PF00134 | PIRSF:PIRSF028758 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR10026 | PANTHER:PTHR10026:SF77 | UniProt:Q8LBC0 |
| SMART:SM00385 | SUPFAM:SSF47954 | UniParc:UPI00000AC2FB | SEG:seg | : | : |
Description
CYCT1-3Cyclin-T1-3 [Source:UniProtKB/Swiss-Prot;Acc:Q8LBC0]
Coordinates
chr1:+:9611053..9614336
Molecular Weight (calculated)
36764.1 Da
IEP (calculated)
8.166
GRAVY (calculated)
-0.312
Length
317 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEEHPRKRS RQHFEAEARN VSLFESPQCE TSKWYFSREE IERFSPSRKD GIDLVKESFL RSSYCTFLQR LGMKLHVSQV TISCAMVMCH RFYMRQSHAK
101: NDWQTIATSS LFLACKAEDE PCQLSSVVVA SYEIIYEWDP SASIRIHQTE CYHEFKEIIL SGESLLLSTS AFHLDIELPY KPLAAALNRL NAWPDLATAA
201: WNFVHDWIRT TLCLQYKPHV IATATVHLAA TFQNAKVGSR RDWWLEFGVT TKLLKEVIQE MCTLIEVDRR RNMPPPPPPP RRELSWAIPA AVKPVHMARA
301: YPFHSYPLQS YRQAGIW
101: NDWQTIATSS LFLACKAEDE PCQLSSVVVA SYEIIYEWDP SASIRIHQTE CYHEFKEIIL SGESLLLSTS AFHLDIELPY KPLAAALNRL NAWPDLATAA
201: WNFVHDWIRT TLCLQYKPHV IATATVHLAA TFQNAKVGSR RDWWLEFGVT TKLLKEVIQE MCTLIEVDRR RNMPPPPPPP RRELSWAIPA AVKPVHMARA
301: YPFHSYPLQS YRQAGIW
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.