CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EES15089

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27630.1	EES15089	AT5G10270.1	12678503
AT1G27630.1	EES15089	AT5G10270.1	20706207
AT1G27630.1	EES15089	AT5G64960.1	12678503
AT1G27630.1	EES15089	AT5G64960.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d015164_P001	Maize	cytosol	71.07	72.24
Os02t0133000-00	Rice	extracellular	47.2	58.52
GSMUA_Achr3P20770_001	Banana	nucleus	30.38	40.19
GSMUA_Achr8P18640_001	Banana	nucleus	29.29	39.13
AT1G27630.1	Thale cress	cytosol	22.06	38.49
CDY03933	Canola	cytosol	21.34	37.7
Bra030056.1-P	Field mustard	cytosol	21.16	37.38
CDY60279	Canola	cytosol	21.16	37.38
Bra010927.1-P	Field mustard	nucleus	21.34	36.88
CDX90099	Canola	nucleus	21.34	36.65
CDY11776	Canola	cytosol	21.16	36.56
TraesCS6A01G096600.1	Wheat	nucleus	46.11	36.17
TraesCS6B01G125000.1	Wheat	nucleus	47.56	34.88
VIT_18s0001g12980.t01	Wine grape	nucleus	26.4	33.03
Solyc07g032480.2.1	Tomato	nucleus	24.23	32.45
PGSC0003DMT400044127	Potato	nucleus	24.23	31.6
TraesCS6D01G087700.1	Wheat	nucleus	47.02	31.1
EES11326	Sorghum	nucleus	25.68	28.98
EER88086	Sorghum	nucleus	24.77	28.78
HORVU6Hr1G017740.2	Barley	nucleus	43.22	26.29
EES07541	Sorghum	plastid	31.1	24.68
OQU93178	Sorghum	nucleus	23.87	22.6
OQU86869	Sorghum	cytosol, nucleus, plastid	12.48	21.7
KXG23456	Sorghum	nucleus	22.97	21.6
EER97007	Sorghum	nucleus	9.58	20.62
KXG30252	Sorghum	nucleus	11.93	20.43

Protein Annotations

EnsemblPlants:KXG29406	EnsemblPlantsGene:SORBI_3004G031600	EntrezGene:8057520	Gene3D:1.10.472.10	InterPro:Cyclin-like	InterPro:Cyclin-like_sf
InterPro:Cyclin_N	PANTHER:PTHR10026	PANTHER:PTHR10026:SF76	PFAM:PF00134	ProteinID:KXG29406	ProteinID:KXG29406.1
SEG:seg	SMART:SM00385	SUPFAM:SSF47954	unigene:Sbi.18908	UniParc:UPI0007F265CA	UniProt:A0A194YMJ3
MapMan:13.1.1.1.9	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:2547811..2551166

Molecular Weight (calculated)

62853.0 Da

IEP (calculated)

10.107

GRAVY (calculated)

-0.549

Length

553 amino acids

Sequence
(BLAST)

001: MGAALGEERE QGGCGERYPS WYVSREEIER GSPSRRDGVS AAEEADLRAT YCSFIRDVCI RLQLPQITIA TAIMLCHRFY LRQSHAKNQW QTVATVCVFL
101: ASKMEDTPCL LKHVVIVAYE TMYQKNPDAA KRIHQEQEVL AKQKALILVG ETLLLSTIRF DFNIQHPYEP LKFALKKLGI VQKELRQSAM ALINDMLPTT
201: LVVQFKPHYI AAGSLCLAAE FHNVDLSQNE IIWWHVFDVA LDPLKVVVQQ MCQLFKKRAP CSMGPVIKPV PTSSAMDKHQ IKLTPTLTPS PMDKHQILIP
301: TPAPIYRHQS KPIPTPMDKQ QSNLAFHPMD KQQMKPAPTP MDKQQIKLAA APAPAPMYRH QIKPIPTPMD KQQSNLAPTP MDKQQMRMAA APVLTDRQRI
401: VSAPVPALRH TQSSRRNFSD GNTEVSSCVT TSSSFNKNST GRSPRNEGNW YRGKNEENPY WRRHINHNLE HRLEERSNQR TLKSDLAYLV RSGPKDTNAT
501: EIKNLTRQKR RIQEVGGLPT PVYMTDTNAW RQGSGVIVFE TTSSRQKQKV ERR

Best Arabidopsis Sequence Match ( AT1G27630.1 )
(BLAST)

001: MGEEHPRKRS RQHFEAEARN VSLFESPQCE TSKWYFSREE IERFSPSRKD GIDLVKESFL RSSYCTFLQR LGMKLHVSQV TISCAMVMCH RFYMRQSHAK
101: NDWQTIATSS LFLACKAEDE PCQLSSVVVA SYEIIYEWDP SASIRIHQTE CYHEFKEIIL SGESLLLSTS AFHLDIELPY KPLAAALNRL NAWPDLATAA
201: WNFVHDWIRT TLCLQYKPHV IATATVHLAA TFQNAKVGSR RDWWLEFGVT TKLLKEVIQE MCTLIEVDRR RNMPPPPPPP RRELSWAIPA AVKPVHMARA
301: YPFHSYPLQS YRQAGIW

Arabidopsis Description

CYCT1-3Cyclin-T1-3 [Source:UniProtKB/Swiss-Prot;Acc:Q8LBC0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.